Chinese Journal OF Rice Science ›› 2018, Vol. 32 ›› Issue (1): 23-34.DOI: 10.16819/j.1001-7216.2018.7075
• Orginal Article • Previous Articles Next Articles
Han LIN1, Jiangmin XU1, Huqian HU1, An ZHENG1, Wanlu XU1, Ping LOU1, Yuexing WANG2, Dali ZENG2,*(), Yuchun RAO1,2,*()
Received:
2017-06-20
Revised:
2017-08-21
Online:
2018-01-10
Published:
2018-01-10
Contact:
Dali ZENG, Yuchun RAO
About author:
These authors contributed equally to this work:LIN Han, XU Jiangmin, HU Huqian;
林晗1, 徐江民1, 胡瑚倩1, 郑安1, 徐婉璐1, 漏平1, 王跃星2, 曾大力2,*(), 饶玉春1,2,*()
通讯作者:
曾大力,饶玉春
作者简介:
共同第一作者:林晗, 徐江民, 胡瑚倩;
基金资助:
CLC Number:
Han LIN, Jiangmin XU, Huqian HU, An ZHENG, Wanlu XU, Ping LOU, Yuexing WANG, Dali ZENG, Yuchun RAO. Identifying of QTLs for Resistance to Metal Irons Stress in Rice[J]. Chinese Journal OF Rice Science, 2018, 32(1): 23-34.
林晗, 徐江民, 胡瑚倩, 郑安, 徐婉璐, 漏平, 王跃星, 曾大力, 饶玉春. 水稻耐金属离子胁迫的QTL分析[J]. 中国水稻科学, 2018, 32(1): 23-34.
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URL: http://www.ricesci.cn/EN/10.16819/j.1001-7216.2018.7075
分子标记 Marker | 正向引物(5′-3′) Forward prime(5′-3′) | 反向引物(5′-3′) Reverse prime(5′-3′) |
---|---|---|
OsActin1 | TGGCATCTCTCAGCACATTCC | TGCACAATGGATGGGTCAGA |
LOC_Os01g50030 | AGTGAAAACAGCTGGGCATG | GCATTCTTGTGGTGACCGTT |
LOC_Os01g50060 | TGTGGGGTTAGCTCTTGGAG | TTTCACCGTTCAGCACCTTG |
LOC_Os01g50110 | TTTGGCGATCAGTTCTGTGC | TGCTCGTCGTTGATCAGAGA |
LOC_Os01g50360 | GGCTCTGAATGGGTTTTGGG | ATGTAAGGCAGTCAGGACCC |
LOC_Os01g50720 | GTGAACAATGCGCTCGAGAG | AAATGTGTCATGCCCTGCTC |
LOC_Os01g50820 | ATGCTCATCTACTTCCCGCA | CACTCCCGGCTGTAGTACTC |
LOC_Os01g50940 | CCGCCGGAAGATTTCATGAG | GCCTTGACCACCTCCTTCTT |
LOC_Os01g51260 | GCTCACGGTGTCACTCAATC | AGAAAGATTGGCTGGTGGGA |
LOC_Os01g51430 | CTGGGCATGAGAAGTTTCGG | CCAAACAAGAGCAGCCACAT |
LOC_Os01g52110 | CTTGCGAGAAATGGAGGAGC | CTTGCACTTCTGGCACTTGT |
LOC_Os01g52160 | TCGCTTTCCATCTAGAGCCA | CATACGGCGTGATATCCCCT |
LOC_Os01g52450 | TGCTGCTGGGATATATGGCA | CTCCATCCACAGCAATCACG |
Table 1 Primer sequences of real-time fluorescent quantitative PCR.
分子标记 Marker | 正向引物(5′-3′) Forward prime(5′-3′) | 反向引物(5′-3′) Reverse prime(5′-3′) |
---|---|---|
OsActin1 | TGGCATCTCTCAGCACATTCC | TGCACAATGGATGGGTCAGA |
LOC_Os01g50030 | AGTGAAAACAGCTGGGCATG | GCATTCTTGTGGTGACCGTT |
LOC_Os01g50060 | TGTGGGGTTAGCTCTTGGAG | TTTCACCGTTCAGCACCTTG |
LOC_Os01g50110 | TTTGGCGATCAGTTCTGTGC | TGCTCGTCGTTGATCAGAGA |
LOC_Os01g50360 | GGCTCTGAATGGGTTTTGGG | ATGTAAGGCAGTCAGGACCC |
LOC_Os01g50720 | GTGAACAATGCGCTCGAGAG | AAATGTGTCATGCCCTGCTC |
LOC_Os01g50820 | ATGCTCATCTACTTCCCGCA | CACTCCCGGCTGTAGTACTC |
LOC_Os01g50940 | CCGCCGGAAGATTTCATGAG | GCCTTGACCACCTCCTTCTT |
LOC_Os01g51260 | GCTCACGGTGTCACTCAATC | AGAAAGATTGGCTGGTGGGA |
LOC_Os01g51430 | CTGGGCATGAGAAGTTTCGG | CCAAACAAGAGCAGCCACAT |
LOC_Os01g52110 | CTTGCGAGAAATGGAGGAGC | CTTGCACTTCTGGCACTTGT |
LOC_Os01g52160 | TCGCTTTCCATCTAGAGCCA | CATACGGCGTGATATCCCCT |
LOC_Os01g52450 | TGCTGCTGGGATATATGGCA | CTCCATCCACAGCAATCACG |
性状 Trait | 阈值 Threshold value | 区间 Interval | 染色体 Chr. | 贡献率 Phenotypic variations explained/% | |
---|---|---|---|---|---|
亚铁胁迫2 d后平均最长根长 | 7.78 | RM1297 | –RM1061 | 1 | 24.47 |
The average longest root length after 2 d of ferrous treatment | |||||
亚铁胁迫4 d后平均最长根长 | 7.78 | RM1297 | –RM1061 | 1 | 23.01 |
The average longest root length after 4 d of ferrous treatment | |||||
镉胁迫2 d后平均最长根长 | 7.96 | RM3411 | –RM212 | 1 | 6.40 |
The average longest root length after 2 d of cadmium treatment | |||||
铝胁迫根平均伸长量 | 7.69 | SSIII-1 | –RM3306 | 4 | 11.11 |
The average root elongation after aluminum treatment | RM1370 | –SBE1 | 6 | 9.29 | |
铝胁迫根相对伸长率 | 7.69 | RM324 | –RM341 | 2 | 11.66 |
Relative root elongation rate after aluminum treatment | RM1083 | –SSII-1 | 10 | 8.68 | |
RM286 | –RM1812 | 11 | 8.84 | ||
钠胁迫叶片枯死率Withered leaf rate after sodium treatment | 7.71 | RM1026 | –RM205 | 9 | 12.21 |
Table 2 Location of QTLs related to tolerance to metal ions at the rice germination stage in the DH population.
性状 Trait | 阈值 Threshold value | 区间 Interval | 染色体 Chr. | 贡献率 Phenotypic variations explained/% | |
---|---|---|---|---|---|
亚铁胁迫2 d后平均最长根长 | 7.78 | RM1297 | –RM1061 | 1 | 24.47 |
The average longest root length after 2 d of ferrous treatment | |||||
亚铁胁迫4 d后平均最长根长 | 7.78 | RM1297 | –RM1061 | 1 | 23.01 |
The average longest root length after 4 d of ferrous treatment | |||||
镉胁迫2 d后平均最长根长 | 7.96 | RM3411 | –RM212 | 1 | 6.40 |
The average longest root length after 2 d of cadmium treatment | |||||
铝胁迫根平均伸长量 | 7.69 | SSIII-1 | –RM3306 | 4 | 11.11 |
The average root elongation after aluminum treatment | RM1370 | –SBE1 | 6 | 9.29 | |
铝胁迫根相对伸长率 | 7.69 | RM324 | –RM341 | 2 | 11.66 |
Relative root elongation rate after aluminum treatment | RM1083 | –SSII-1 | 10 | 8.68 | |
RM286 | –RM1812 | 11 | 8.84 | ||
钠胁迫叶片枯死率Withered leaf rate after sodium treatment | 7.71 | RM1026 | –RM205 | 9 | 12.21 |
Fig. 4. Expression analysis of Fe2+ tolerance genes. TN1-C and CJ06-C represent 1.75×103 mg/L iron treatment. *, ** represent significant difference between the treatment and the control at the 0.05 and 0.01 level, respectively.
基因ID Gene ID | 基因 Gene | 功能 Function |
---|---|---|
甲基转移酶 Methyltransferase | ||
29610 | LOC_Os01g50480 | SAM依赖性羧基甲基转移酶 SAM dependent carboxyl methyltransferase |
29597 | LOC_Os01g50610 | SAM依赖性羧基甲基转移酶 SAM dependent carboxyl methyltransferase |
50898 | LOC_Os01g50030 | 磷酸乙醇胺N-甲基转移酶 Phosphoethanolamine N-methyltransferase |
结构域蛋白 Domain containing protein | ||
50218 | LOC_Os01g50940 | 螺旋-环-螺旋DNA结合结构域蛋白 Helix-loop-helix DNA-binding domain containing protein |
50214 | LOC_Os01g51140 | 螺旋-环-螺旋DNA结合结构域蛋白 Helix-loop-helix DNA-binding domain containing protein |
29628 | LOC_Os01g50360 | NAC结构域蛋白 NAC domain containing protein |
50236 | LOC_Os01g50900 | Cupin结构域蛋白 Cupin domain containing protein |
50239 | LOC_Os01g51010 | 未知功能结构域292蛋白 DUF292 domain containing protein |
49652 | LOC_Os01g51990 | AN1锌指结构域蛋白 AN1-like zinc finger domain containing protein |
16764 | LOC_Os01g52410 | MYB类DNA结合结构域蛋白 MYB-like DNA-binding domain containing protein |
49619 | LOC_Os01g52160 | 重金属相关蛋白结构域 Heavy metal-associated domain containing protein |
转录因子 Transcription factor | ||
29592 | LOC_Os01g50720 | MYB转录因子家族 MYB family transcription factor |
50207 | LOC_Os01g51260 | MYB转录因子家族 MYB family transcription factor |
49627 | LOC_Os01g52090 | 转录因子样蛋白 Transcription factor like protein |
1822 | LOC_Os01g51610 | 转录因子 Transcription factor |
1976 | LOC_Os01g50110 | MYB转录因子 MYB transcription factor |
1805 | LOC_Os01g51690 | WRKY转录因子 WRKY transcription factor |
转运蛋白 Transporter | ||
49616 | LOC_Os01g52130 | 硫酸盐转运蛋白 Sulfate transporter |
29598 | LOC_Os01g50616 | 磷脂酰肌醇转移蛋白 Phosphatidylinositol transfer |
29637 | LOC_Os01g50060 | ACC脱氨酶 1-aminocyclopropane-1-carboxylate deaminase |
29639 | LOC_Os01g50080 | MDR类ABC运输蛋白 MDR-like ABC transporter |
29641 | LOC_Os01g50100 | ABC运输蛋白,ATP结合蛋白 ABC transporter, ATP-binding protein |
2459 | LOC_Os01g50820 | 高亲和性硝酸盐转运蛋白 High affinity nitrate transporters |
蛋白家族 Family protein | ||
29590 | LOC_Os01g50700 | 脱水蛋白家族 Dehydrin family protein |
28943 | LOC_Os01g51400 | 富亮氨酸重复蛋白家族 Leucine rich repeat family protein |
锌指蛋白 Zinc finger protein | ||
28911 | LOC_Os01g51710 | 锌指结构域蛋白 Zinc knuckle domain containing protein |
29595 | LOC_Os01g50750 | C3HC4型锌指结构域蛋白质 Zinc finger, C3HC4 type domain containing protein |
49623 | LOC_Os01g52030 | 锌指蛋白A20和AN1域包含胁迫相关蛋白Zinc finger A20 and AN1 domain-containing stress-associated protein |
49639 | LOC_Os01g52110 | 环锌指蛋白 Ring zinc finger protein |
酶 Enzyme | ||
16778 | LOC_Os01g52450 | 己糖激酶 Hexokinase |
49650 | LOC_Os01g51860 | 紫黄质脱环氧化酶 Violaxanthin de-epoxidase |
通道蛋白 Channel protein | ||
49625 | LOC_Os01g52070 | 钾通道AKT1 potassium channel AKT1 |
Table 3 The predicted genes involved in resistance to Fe toxicity on rice chromosome 1.
基因ID Gene ID | 基因 Gene | 功能 Function |
---|---|---|
甲基转移酶 Methyltransferase | ||
29610 | LOC_Os01g50480 | SAM依赖性羧基甲基转移酶 SAM dependent carboxyl methyltransferase |
29597 | LOC_Os01g50610 | SAM依赖性羧基甲基转移酶 SAM dependent carboxyl methyltransferase |
50898 | LOC_Os01g50030 | 磷酸乙醇胺N-甲基转移酶 Phosphoethanolamine N-methyltransferase |
结构域蛋白 Domain containing protein | ||
50218 | LOC_Os01g50940 | 螺旋-环-螺旋DNA结合结构域蛋白 Helix-loop-helix DNA-binding domain containing protein |
50214 | LOC_Os01g51140 | 螺旋-环-螺旋DNA结合结构域蛋白 Helix-loop-helix DNA-binding domain containing protein |
29628 | LOC_Os01g50360 | NAC结构域蛋白 NAC domain containing protein |
50236 | LOC_Os01g50900 | Cupin结构域蛋白 Cupin domain containing protein |
50239 | LOC_Os01g51010 | 未知功能结构域292蛋白 DUF292 domain containing protein |
49652 | LOC_Os01g51990 | AN1锌指结构域蛋白 AN1-like zinc finger domain containing protein |
16764 | LOC_Os01g52410 | MYB类DNA结合结构域蛋白 MYB-like DNA-binding domain containing protein |
49619 | LOC_Os01g52160 | 重金属相关蛋白结构域 Heavy metal-associated domain containing protein |
转录因子 Transcription factor | ||
29592 | LOC_Os01g50720 | MYB转录因子家族 MYB family transcription factor |
50207 | LOC_Os01g51260 | MYB转录因子家族 MYB family transcription factor |
49627 | LOC_Os01g52090 | 转录因子样蛋白 Transcription factor like protein |
1822 | LOC_Os01g51610 | 转录因子 Transcription factor |
1976 | LOC_Os01g50110 | MYB转录因子 MYB transcription factor |
1805 | LOC_Os01g51690 | WRKY转录因子 WRKY transcription factor |
转运蛋白 Transporter | ||
49616 | LOC_Os01g52130 | 硫酸盐转运蛋白 Sulfate transporter |
29598 | LOC_Os01g50616 | 磷脂酰肌醇转移蛋白 Phosphatidylinositol transfer |
29637 | LOC_Os01g50060 | ACC脱氨酶 1-aminocyclopropane-1-carboxylate deaminase |
29639 | LOC_Os01g50080 | MDR类ABC运输蛋白 MDR-like ABC transporter |
29641 | LOC_Os01g50100 | ABC运输蛋白,ATP结合蛋白 ABC transporter, ATP-binding protein |
2459 | LOC_Os01g50820 | 高亲和性硝酸盐转运蛋白 High affinity nitrate transporters |
蛋白家族 Family protein | ||
29590 | LOC_Os01g50700 | 脱水蛋白家族 Dehydrin family protein |
28943 | LOC_Os01g51400 | 富亮氨酸重复蛋白家族 Leucine rich repeat family protein |
锌指蛋白 Zinc finger protein | ||
28911 | LOC_Os01g51710 | 锌指结构域蛋白 Zinc knuckle domain containing protein |
29595 | LOC_Os01g50750 | C3HC4型锌指结构域蛋白质 Zinc finger, C3HC4 type domain containing protein |
49623 | LOC_Os01g52030 | 锌指蛋白A20和AN1域包含胁迫相关蛋白Zinc finger A20 and AN1 domain-containing stress-associated protein |
49639 | LOC_Os01g52110 | 环锌指蛋白 Ring zinc finger protein |
酶 Enzyme | ||
16778 | LOC_Os01g52450 | 己糖激酶 Hexokinase |
49650 | LOC_Os01g51860 | 紫黄质脱环氧化酶 Violaxanthin de-epoxidase |
通道蛋白 Channel protein | ||
49625 | LOC_Os01g52070 | 钾通道AKT1 potassium channel AKT1 |
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