Chinese Journal OF Rice Science ›› 2024, Vol. 38 ›› Issue (3): 256-265.DOI: 10.16819/j.1001-7216.2024.231012
• Research Papers • Previous Articles Next Articles
YIN Xiaoxiao, ZHANG Zhihan, YAN Xiulian, LIAO Rong, YANG Sijia, Beenish HASSAN, GUO Daiming, FAN Jing, ZHAO Zhixue*(), WANG Wenming*()
Received:
2023-10-30
Revised:
2023-12-12
Online:
2024-05-10
Published:
2024-05-13
Contact:
*email: zhixuezhao@sicau.edu.cn;
j316wenmingwang@163.com
尹潇潇, 张芷菡, 颜绣莲, 廖蓉, 杨思葭, 郭岱铭, 樊晶, 赵志学*(), 王文明*()
通讯作者:
*email: zhixuezhao@sicau.edu.cn;
j316wenmingwang@163.com
基金资助:
YIN Xiaoxiao, ZHANG Zhihan, YAN Xiulian, LIAO Rong, YANG Sijia, Beenish HASSAN, GUO Daiming, FAN Jing, ZHAO Zhixue, WANG Wenming. Signal Peptide Validation and Expression Analysis of Multiple Effectors from Ustilaginoidea virens[J]. Chinese Journal OF Rice Science, 2024, 38(3): 256-265.
尹潇潇, 张芷菡, 颜绣莲, 廖蓉, 杨思葭, 郭岱铭, 樊晶, 赵志学, 王文明. 多个稻曲病菌效应因子的信号肽验证和表达分析[J]. 中国水稻科学, 2024, 38(3): 256-265.
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URL: http://www.ricesci.cn/EN/10.16819/j.1001-7216.2024.231012
引物名称 Primer name | 引物序列(5′-3′) Primer sequence(5′-3′) | 用途 Usage | |
---|---|---|---|
Psuc2-44-F | AATTCATGAAGGCCTCGACGCTGCTGGCTCTCCTGCCCTTTGCCGCGGCCC | 酵母系统鉴定信号肽功能 Functional validation of the signal peptides using yeast | |
Psuc2-44-R | TCGAGGGCCGCGGCAAAGGGCAGGAGAGCCAGCAGCGTCGAGGCCTTCATG | ||
Psuc2-1548-F | AATTCATGAACCCAATCCTGCTTCTCCTCGCCGCATCAGTCCCCGCCCGCAGCC | ||
Psuc2-1548-R | TCGAGGCTGCGGGCGGGGACTGATGCGGCGAGGAGAAGCAGGATTGGGTTCATG | ||
Psuc2-1567-F | AATTCATGCAGTTGTCCTACCTTCTCTCGCTCGTCTCCCTTGTGGCCGCTC | ||
Psuc2-1567-R | TCGAGAGCGGCCACAAGGGAGACGAGCGAGAGAAGGTAGGACAACTGCATG | ||
Psuc2-1990-F | AATTCATGCGCCCAGCAACCGTCATCTTCGCACTGGCCGTCTCCGTCAAGGCTC | ||
Psuc2-1990-R | TCGAGAGCCTTGACGGAGACGGCCAGTGCGAAGATGACGGTTGCTGGGCGCATG | ||
Psuc2-3667-F | AATTCATGAAGTACACTGCTGCTCTCGTCGCCCTGGCTGCTGCCGTCATGGCCC | ||
Psuc2-3667-R | TCGAGGGCCATGACGGCAGCAGCCAGGGCGACGAGAGCAGCAGTGTACTTCATG | ||
Psuc2-4213-F | AATTCATGATTCTGCTGCTCCTCTTGCTATGCACGACAACATGTTTAGGAC | ||
Psuc2-4213-R | TCGAGTCCTAAACATGTTGTCGTGCATAGCAAGAGGAGCAGCAGAATCATG | ||
Psuc2-4989-F | AATTCATGCACCAGCTCCTTGCACTACTCCTCGCCAGCCTCACCGCTGCCC | ||
Psuc2-4989-R | TCGAGGGCAGCGGTGAGGCTGGCGAGGAGTAGTGCAAGGAGCTGGTGCATG | ||
Psuc2-5215-F | AATTCATGAAGTTTATTTCCCTCGTAGCCGCGGCCGGTGTGGCGTATGCCC | ||
Psuc2-5215-R | TCGAGGGCATACGCCACACCGGCCGCGGCTACGAGGGAAATAAACTTCATG | ||
Psuc2-6754-F | AATTCATGGCTGCAGCATCAGCCCTTTTCTTCCTCACGGCGGCTGTCTCCTGGACAC | ||
Psuc2-6754-R | TCGAGTGTCCAGGAGACAGCCGCCGTGAGGAAGAAAAGGGCTGATGCTGCAGCCATG | ||
Psuc2-8184-F | AATTCATGCAAATCGTCCTCCCTCTCCTGGCCTGCGCAGCCGTGGCTGCCGCCC | ||
Psuc2-8184-R | TCGAGGGCGGCAGCCACGGCTGCGCAGGCCAGGAGAGGGAGGACGATTTGCATG | ||
P1300-44-F | CATGAAGGCCTCGACGCTGCTGGCTCTCCTGCCCTTTGCCGCGGCCGGTAC | 烟草瞬时表达鉴定信号肽功能 Functional validation of the signal peptides using N. benthamiana | |
P1300-44-R | CGGCCGCGGCAAAGGGCAGGAGAGCCAGCAGCGTCGAGGCCTTCATGGTAC | ||
P1300-1548-F | CATGAACCCAATCCTGCTTCTCCTCGCCGCATCAGTCCCCGCCCGCAGCGGTAC | ||
P1300-1548-R | CGCTGCGGGCGGGGACTGATGCGGCGAGGAGAAGCAGGATTGGGTTCATGGTAC | ||
P1300-1567-F | CATGCAGTTGTCCTACCTTCTCTCGCTCGTCTCCCTTGTGGCCGCTGGTAC | ||
P1300-1567-R | CAGCGGCCACAAGGGAGACGAGCGAGAGAAGGTAGGACAACTGCATGGTAC | ||
P1300-1990-F | CATGCGCCCAGCAACCGTCATCTTCGCACTGGCCGTCTCCGTCAAGGCTGGTAC | ||
P1300-1990-R | CAGCCTTGACGGAGACGGCCAGTGCGAAGATGACGGTTGCTGGGCGCATGGTAC | ||
P1300-3667-F | CATGAAGTACACTGCTGCTCTCGTCGCCCTGGCTGCTGCCGTCATGGCCGGTAC | ||
P1300-3667-R | CGGCCATGACGGCAGCAGCCAGGGCGACGAGAGCAGCAGTGTACTTCATGGTAC | ||
P1300-4213-F | CATGATTCTGCTGCTCCTCTTGCTATGCACGACAACATGTTTAGGAGGTAC | ||
P1300-4213-R | CTCCTAAACATGTTGTCGTGCATAGCAAGAGGAGCAGCAGAATCATGGTAC | ||
P1300-4989-F | CATGCACCAGCTCCTTGCACTACTCCTCGCCAGCCTCACCGCTGCCGGTAC | ||
P1300-4989-R | CGGCAGCGGTGAGGCTGGCGAGGAGTAGTGCAAGGAGCTGGTGCATGGTAC | ||
P1300-5215-F | CATGAAGTTTATTTCCCTCGTAGCCGCGGCCGGTGTGGCGTATGCCGGTAC | ||
P1300-5215-R | CGGCATACGCCACACCGGCCGCGGCTACGAGGGAAATAAACTTCATGGTAC | ||
P1300-6754-F | CATGGCTGCAGCATCAGCCCTTTTCTTCCTCACGGCGGCTGTCTCCTGGACAGGTAC | ||
P1300-6754-R | CTGTCCAGGAGACAGCCGCCGTGAGGAAGAAAAGGGCTGATGCTGCAGCCATGGTAC | ||
P1300-8184-F | CATGCAAATCGTCCTCCCTCTCCTGGCCTGCGCAGCCGTGGCTGCCGCCGGTAC | ||
P1300-8184-R | CGGCGGCAGCCACGGCTGCGCAGGCCAGGAGAGGGAGGACGATTTGCATGGTAC | ||
Uv_Tublin2α-2F/R | ACCAGCTCGTTGAGAACTCG / AATCAGAGTTGAGCTGGCCG | 实时荧光定量PCR RT-qPCR | |
UV_44-RT-F/R | GCGTTGCCAAGAAGACCAAG / ATTCCAGCAATCACGGCAGA | ||
UV_1548-RT- F/R | GACAACGGGCAGACAAACTG / CTAGCAATCCCAGCAGTCGT | ||
UV_1567-RT-F/R | TGCTAGCGCTATCGTTCCTG / GTCGGCATGGTTTTGCAACT | ||
UV_1990-RT-F/R | ACTCACTTCCAAACACGGCA / GCCTTGTCTTCTCAACACGC | ||
UV_3667-RT-F/R | GCCTCCTCTGCAATGTGGAA / CTTGAGGCAGTTGAGTCCGA | ||
UV_4213-RT-F/R | ATGCGAGAACTTGGTCGTGT / AACCAACGCCTCCAACTTGA | ||
UV_4989-RT-F/R | CCTGCCTCCTTCGTCCAAAT / GGTCGATCTGGCAAAGTGGA | ||
UV_5215-RT-F/R | TAGCGTACTGCGACGGTAAC / GAAACAGCGCCCAATTCCTG | ||
UV_6754-RT-F/R | AAATGCGAGGACTAGGGCAC / CTTTTTGCCGGAGGAGGTCT | ||
UV_8184-RT-F/R | CATCGCTGCGAAGACAAAGG / GCGCCTGTGAACTTTTCCTG |
Table 1. Primers used in this study
引物名称 Primer name | 引物序列(5′-3′) Primer sequence(5′-3′) | 用途 Usage | |
---|---|---|---|
Psuc2-44-F | AATTCATGAAGGCCTCGACGCTGCTGGCTCTCCTGCCCTTTGCCGCGGCCC | 酵母系统鉴定信号肽功能 Functional validation of the signal peptides using yeast | |
Psuc2-44-R | TCGAGGGCCGCGGCAAAGGGCAGGAGAGCCAGCAGCGTCGAGGCCTTCATG | ||
Psuc2-1548-F | AATTCATGAACCCAATCCTGCTTCTCCTCGCCGCATCAGTCCCCGCCCGCAGCC | ||
Psuc2-1548-R | TCGAGGCTGCGGGCGGGGACTGATGCGGCGAGGAGAAGCAGGATTGGGTTCATG | ||
Psuc2-1567-F | AATTCATGCAGTTGTCCTACCTTCTCTCGCTCGTCTCCCTTGTGGCCGCTC | ||
Psuc2-1567-R | TCGAGAGCGGCCACAAGGGAGACGAGCGAGAGAAGGTAGGACAACTGCATG | ||
Psuc2-1990-F | AATTCATGCGCCCAGCAACCGTCATCTTCGCACTGGCCGTCTCCGTCAAGGCTC | ||
Psuc2-1990-R | TCGAGAGCCTTGACGGAGACGGCCAGTGCGAAGATGACGGTTGCTGGGCGCATG | ||
Psuc2-3667-F | AATTCATGAAGTACACTGCTGCTCTCGTCGCCCTGGCTGCTGCCGTCATGGCCC | ||
Psuc2-3667-R | TCGAGGGCCATGACGGCAGCAGCCAGGGCGACGAGAGCAGCAGTGTACTTCATG | ||
Psuc2-4213-F | AATTCATGATTCTGCTGCTCCTCTTGCTATGCACGACAACATGTTTAGGAC | ||
Psuc2-4213-R | TCGAGTCCTAAACATGTTGTCGTGCATAGCAAGAGGAGCAGCAGAATCATG | ||
Psuc2-4989-F | AATTCATGCACCAGCTCCTTGCACTACTCCTCGCCAGCCTCACCGCTGCCC | ||
Psuc2-4989-R | TCGAGGGCAGCGGTGAGGCTGGCGAGGAGTAGTGCAAGGAGCTGGTGCATG | ||
Psuc2-5215-F | AATTCATGAAGTTTATTTCCCTCGTAGCCGCGGCCGGTGTGGCGTATGCCC | ||
Psuc2-5215-R | TCGAGGGCATACGCCACACCGGCCGCGGCTACGAGGGAAATAAACTTCATG | ||
Psuc2-6754-F | AATTCATGGCTGCAGCATCAGCCCTTTTCTTCCTCACGGCGGCTGTCTCCTGGACAC | ||
Psuc2-6754-R | TCGAGTGTCCAGGAGACAGCCGCCGTGAGGAAGAAAAGGGCTGATGCTGCAGCCATG | ||
Psuc2-8184-F | AATTCATGCAAATCGTCCTCCCTCTCCTGGCCTGCGCAGCCGTGGCTGCCGCCC | ||
Psuc2-8184-R | TCGAGGGCGGCAGCCACGGCTGCGCAGGCCAGGAGAGGGAGGACGATTTGCATG | ||
P1300-44-F | CATGAAGGCCTCGACGCTGCTGGCTCTCCTGCCCTTTGCCGCGGCCGGTAC | 烟草瞬时表达鉴定信号肽功能 Functional validation of the signal peptides using N. benthamiana | |
P1300-44-R | CGGCCGCGGCAAAGGGCAGGAGAGCCAGCAGCGTCGAGGCCTTCATGGTAC | ||
P1300-1548-F | CATGAACCCAATCCTGCTTCTCCTCGCCGCATCAGTCCCCGCCCGCAGCGGTAC | ||
P1300-1548-R | CGCTGCGGGCGGGGACTGATGCGGCGAGGAGAAGCAGGATTGGGTTCATGGTAC | ||
P1300-1567-F | CATGCAGTTGTCCTACCTTCTCTCGCTCGTCTCCCTTGTGGCCGCTGGTAC | ||
P1300-1567-R | CAGCGGCCACAAGGGAGACGAGCGAGAGAAGGTAGGACAACTGCATGGTAC | ||
P1300-1990-F | CATGCGCCCAGCAACCGTCATCTTCGCACTGGCCGTCTCCGTCAAGGCTGGTAC | ||
P1300-1990-R | CAGCCTTGACGGAGACGGCCAGTGCGAAGATGACGGTTGCTGGGCGCATGGTAC | ||
P1300-3667-F | CATGAAGTACACTGCTGCTCTCGTCGCCCTGGCTGCTGCCGTCATGGCCGGTAC | ||
P1300-3667-R | CGGCCATGACGGCAGCAGCCAGGGCGACGAGAGCAGCAGTGTACTTCATGGTAC | ||
P1300-4213-F | CATGATTCTGCTGCTCCTCTTGCTATGCACGACAACATGTTTAGGAGGTAC | ||
P1300-4213-R | CTCCTAAACATGTTGTCGTGCATAGCAAGAGGAGCAGCAGAATCATGGTAC | ||
P1300-4989-F | CATGCACCAGCTCCTTGCACTACTCCTCGCCAGCCTCACCGCTGCCGGTAC | ||
P1300-4989-R | CGGCAGCGGTGAGGCTGGCGAGGAGTAGTGCAAGGAGCTGGTGCATGGTAC | ||
P1300-5215-F | CATGAAGTTTATTTCCCTCGTAGCCGCGGCCGGTGTGGCGTATGCCGGTAC | ||
P1300-5215-R | CGGCATACGCCACACCGGCCGCGGCTACGAGGGAAATAAACTTCATGGTAC | ||
P1300-6754-F | CATGGCTGCAGCATCAGCCCTTTTCTTCCTCACGGCGGCTGTCTCCTGGACAGGTAC | ||
P1300-6754-R | CTGTCCAGGAGACAGCCGCCGTGAGGAAGAAAAGGGCTGATGCTGCAGCCATGGTAC | ||
P1300-8184-F | CATGCAAATCGTCCTCCCTCTCCTGGCCTGCGCAGCCGTGGCTGCCGCCGGTAC | ||
P1300-8184-R | CGGCGGCAGCCACGGCTGCGCAGGCCAGGAGAGGGAGGACGATTTGCATGGTAC | ||
Uv_Tublin2α-2F/R | ACCAGCTCGTTGAGAACTCG / AATCAGAGTTGAGCTGGCCG | 实时荧光定量PCR RT-qPCR | |
UV_44-RT-F/R | GCGTTGCCAAGAAGACCAAG / ATTCCAGCAATCACGGCAGA | ||
UV_1548-RT- F/R | GACAACGGGCAGACAAACTG / CTAGCAATCCCAGCAGTCGT | ||
UV_1567-RT-F/R | TGCTAGCGCTATCGTTCCTG / GTCGGCATGGTTTTGCAACT | ||
UV_1990-RT-F/R | ACTCACTTCCAAACACGGCA / GCCTTGTCTTCTCAACACGC | ||
UV_3667-RT-F/R | GCCTCCTCTGCAATGTGGAA / CTTGAGGCAGTTGAGTCCGA | ||
UV_4213-RT-F/R | ATGCGAGAACTTGGTCGTGT / AACCAACGCCTCCAACTTGA | ||
UV_4989-RT-F/R | CCTGCCTCCTTCGTCCAAAT / GGTCGATCTGGCAAAGTGGA | ||
UV_5215-RT-F/R | TAGCGTACTGCGACGGTAAC / GAAACAGCGCCCAATTCCTG | ||
UV_6754-RT-F/R | AAATGCGAGGACTAGGGCAC / CTTTTTGCCGGAGGAGGTCT | ||
UV_8184-RT-F/R | CATCGCTGCGAAGACAAAGG / GCGCCTGTGAACTTTTCCTG |
基因名称 Gene name | 蛋白大小(氨基酸) Length of protein (aa) | 信号肽长度(氨基酸) Length of signal peptide (aa) | 信号肽评分 Signal peptide scoring(Sec/SPI) |
---|---|---|---|
UV_44 | 386 | 15 | 0.8501 |
UV_1548 | 104 | 16 | 0.9929 |
UV_1567 | 388 | 15 | 0.9722 |
UV_1990 | 279 | 16 | 0.9845 |
UV_3667 | 89 | 16 | 0.9995 |
UV_4213 | 216 | 15 | 0.9642 |
UV_4989 | 231 | 15 | 0.9924 |
UV_5215 | 88 | 15 | 0.9981 |
UV_6754 | 211 | 17 | 0.4707 |
UV_8184 | 106 | 16 | 0.9982 |
Table 2. Signal peptide prediction of ten effectors from U. virens
基因名称 Gene name | 蛋白大小(氨基酸) Length of protein (aa) | 信号肽长度(氨基酸) Length of signal peptide (aa) | 信号肽评分 Signal peptide scoring(Sec/SPI) |
---|---|---|---|
UV_44 | 386 | 15 | 0.8501 |
UV_1548 | 104 | 16 | 0.9929 |
UV_1567 | 388 | 15 | 0.9722 |
UV_1990 | 279 | 16 | 0.9845 |
UV_3667 | 89 | 16 | 0.9995 |
UV_4213 | 216 | 15 | 0.9642 |
UV_4989 | 231 | 15 | 0.9924 |
UV_5215 | 88 | 15 | 0.9981 |
UV_6754 | 211 | 17 | 0.4707 |
UV_8184 | 106 | 16 | 0.9982 |
Fig. 1. Construction of vectors and identification of the positive clones A, Diagrams of the pCAMBIA1300-35S-eYFP-RBS and pSUC2 plasmids; B, Positive clones were identified by PCR and agarose gel electrophoresis.
Fig. 2. Subcellular localization of the transiently expressed signal peptides of ten effectors from U. virens in N. benthamiana Subcellular localization of the fusion proteins containing the predicted signal peptide before (A) and after (B) plasmolysis induced by 0.8 mol/L mannitol. The images were captured at 36 h after infiltration. EV was used as a negative control, and AvrL567SP was used as a positive control.
Fig. 3. Functional evaluation of the signal peptides using the yeast invertase assay A, Diagrams showing the sample location on Petri plates; B, C and D, Detection of the secretion of signal peptides by the yeast signal trap assay; E, TTC assay of the signal peptides. pSUC2-Avr1b was used as a positive control. YTK12 and pSUC2-Mg87 were used as the negative controls.
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