Chinese Journal OF Rice Science ›› 2021, Vol. 35 ›› Issue (5): 449-454.DOI: 10.16819/j.1001-7216.2021.201105
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Xina CHEN#, Zeke YUAN#, Zhenzhen HU, Quanzhi ZHAO, Hongzheng SUN*()
Received:
2020-11-16
Revised:
2021-02-05
Online:
2021-09-10
Published:
2021-09-10
Contact:
Hongzheng SUN
About author:
#These authors contributed equally to this work
通讯作者:
孙红正
作者简介:
#共同第一作者
基金资助:
Xina CHEN, Zeke YUAN, Zhenzhen HU, Quanzhi ZHAO, Hongzheng SUN. QTL-Seq Mapping of Head Rice Rate QTLs in japonica Rice[J]. Chinese Journal OF Rice Science, 2021, 35(5): 449-454.
陈喜娜, 袁泽科, 胡珍珍, 赵全志, 孙红正. 利用QTL-Seq定位粳稻整精米率QTL[J]. 中国水稻科学, 2021, 35(5): 449-454.
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URL: http://www.ricesci.cn/EN/10.16819/j.1001-7216.2021.201105
染色体 Chromosome | 起始 Start / Mb | 终止 End / Mb | ΔSNP峰值 ΔSNP peak value | ΔSNP峰值位置 ΔSNP peak position / Mb | G′峰值 G′ peak value | G′峰值位点 G′ peak position / Mb | P值 P value |
---|---|---|---|---|---|---|---|
8 | 20.3 | 22.2 | -0.27 | 20.9 | 8.32 | 20.9 | 0.00 |
8 | 25.9 | 28.4 | -0.28 | 28.4 | 10.73 | 27.5 | 0.00 |
12 | 3.2 | 5.8 | -0.29 | 3.9 | 14.81 | 3.9 | 0.00 |
Table 1 Head rice rate QTLs detected by QTL-Seq.
染色体 Chromosome | 起始 Start / Mb | 终止 End / Mb | ΔSNP峰值 ΔSNP peak value | ΔSNP峰值位置 ΔSNP peak position / Mb | G′峰值 G′ peak value | G′峰值位点 G′ peak position / Mb | P值 P value |
---|---|---|---|---|---|---|---|
8 | 20.3 | 22.2 | -0.27 | 20.9 | 8.32 | 20.9 | 0.00 |
8 | 25.9 | 28.4 | -0.28 | 28.4 | 10.73 | 27.5 | 0.00 |
12 | 3.2 | 5.8 | -0.29 | 3.9 | 14.81 | 3.9 | 0.00 |
Fig. 2. Results of the QTL-seq analysis. The gray line indicates the 95% confidence interval. The horizontal axis indicates the genomic position (Mb) and the vertical axis the ED value.
Fig. 3. SNP-index of all the polymorphic sites on 12 chromosomes with sequencing depth greater than 50. Blue dots indicate SNP-index in the mixed pool consisting of plants with high head rice rate, and green dots indicate SNP-index in the mixed pool consisting of plants with low head rice rate. The vertical axis indicates SNP-index and the horizontal axis indicates genomic position (Mb).
染色体 Chromosome | 名称 Name | 位置 Position | 左标记 Left marker/Mb | 右标记 Right marker/Mb | LOD值 LOD value | 表型贡献率 PVE/% |
---|---|---|---|---|---|---|
8 | qHRR8.1 | 147.8 | 21.8 | 23.2 | 5.11 | 10.80 |
8 | qHRR8.2 | 189.8 | 24.2 | 25.2 | 2.15 | 3.26 |
12 | qHRR12 | 7.9 | 2.9 | 4.5 | 2.61 | 4.06 |
Table 2 Head rice rate QTL located on chromosomes 8 and 12.
染色体 Chromosome | 名称 Name | 位置 Position | 左标记 Left marker/Mb | 右标记 Right marker/Mb | LOD值 LOD value | 表型贡献率 PVE/% |
---|---|---|---|---|---|---|
8 | qHRR8.1 | 147.8 | 21.8 | 23.2 | 5.11 | 10.80 |
8 | qHRR8.2 | 189.8 | 24.2 | 25.2 | 2.15 | 3.26 |
12 | qHRR12 | 7.9 | 2.9 | 4.5 | 2.61 | 4.06 |
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