中国水稻科学 ›› 2023, Vol. 37 ›› Issue (6): 609-616.DOI: 10.16819/j.1001-7216.2023.221109
谢开珍1,2, 张建明2, 程灿2, 周继华2, 牛付安2, 孙滨2, 张安鹏2, 闻伟军3, 代雨婷2, 胡启琰2, 邱越2, 曹黎明2,4,*(), 储黄伟2,4,*(
)
收稿日期:
2022-11-19
修回日期:
2023-02-23
出版日期:
2023-11-10
发布日期:
2023-11-14
通讯作者:
*email: chuhuangwei@saas.sh.cn;clm079@163.com
基金资助:
XIE Kaizhen1,2, ZHANG Jianming2, CHENG Can2, ZHOU Jihua2, NIU Fuan2, SUN Bin2, ZHANG Anpeng2, WEN Weijun3, DAI Yuting2, HU Qiyan2, QIU Yue2, CAO Liming2,4,*(), CHU Huangwei2,4,*(
)
Received:
2022-11-19
Revised:
2023-02-23
Online:
2023-11-10
Published:
2023-11-14
Contact:
*email: chuhuangwei@saas.sh.cn;clm079@163.com
摘要:
【目的】 稻米直链淀粉含量(amylose content, AC)是决定稻米食味品质最为重要的因素之一。筛选具有低直链淀粉含量的水稻种质资源并探究其遗传机制,对于选育具有优质食味品质的水稻新品种具有重要意义。【方法】 测定了22个三系杂交稻的恢复系品种的直链淀粉含量,并利用一个来源于恢复系繁38和申恢26杂交后代的双单倍体(Doubled haploid,DH)群体,分析了控制直链淀粉含量的QTL位点。【结果】 在22个恢复系中发现了2个低直链淀粉含量的品系繁32和繁38,其直链淀粉含量分别为11.39%±0.01%和10.58%±0.13%。与其他携带Wxmp等位基因的低直链淀粉材料不同,繁32和繁38携带Wxb等位基因。利用DH群体进行QTL分析,结果共检测到了5个控制直链淀粉含量的QTL 位点(qAC1.1、qAC1.2、qAC5、qAC6.1和qAC6.2)。其中qAC6.1和qAC6.2两年均能检测到。qAC6.2是一个主效QTL位点,其表型贡献率超过30%。【结论】 这些结果表明,繁38中低直链淀粉含量的表型可能主要由qAC6.2位点控制,可为深入研究水稻直链淀粉合成调节机理,及利用分子标记辅助选择技术选育低直链淀粉含量的水稻新品种奠定了基础。
谢开珍, 张建明, 程灿, 周继华, 牛付安, 孙滨, 张安鹏, 闻伟军, 代雨婷, 胡启琰, 邱越, 曹黎明, 储黄伟. 低直链淀粉含量水稻种质资源的鉴定与QTL定位分析[J]. 中国水稻科学, 2023, 37(6): 609-616.
XIE Kaizhen, ZHANG Jianming, CHENG Can, ZHOU Jihua, NIU Fuan, SUN Bin, ZHANG Anpeng, WEN Weijun, DAI Yuting, HU Qiyan, QIU Yue, CAO Liming, CHU Huangwei. Identification and QTL Mapping of Rice Germplasm Resources with Low Amylose Content[J]. Chinese Journal OF Rice Science, 2023, 37(6): 609-616.
名称 Name | 引物序列 Primer sequence | PCR产物 PCR product/bp |
---|---|---|
Wx-1F | CAATGCAACGTACGCCAAGCCGA | 1911 |
Wx-1R | GTACACGACGACGGAGGGGAACCT | |
Wx-2F | ACAACCACCATGTCGGCTCTCACCA | 1687 |
Wx-2R | GGTGAGCACCCTGTCGGCTTCCA | |
Wx-3F | GAGCTGACAACCCTGCACTACTGTCCA | 2005 |
Wx-3R | AACCACTGGTTCATTCGTCTCTCATCCA |
表1 Waxy基因测序引物
Table 1. The sequencing primer of Waxy gene.
名称 Name | 引物序列 Primer sequence | PCR产物 PCR product/bp |
---|---|---|
Wx-1F | CAATGCAACGTACGCCAAGCCGA | 1911 |
Wx-1R | GTACACGACGACGGAGGGGAACCT | |
Wx-2F | ACAACCACCATGTCGGCTCTCACCA | 1687 |
Wx-2R | GGTGAGCACCCTGTCGGCTTCCA | |
Wx-3F | GAGCTGACAACCCTGCACTACTGTCCA | 2005 |
Wx-3R | AACCACTGGTTCATTCGTCTCTCATCCA |
序号 Number | 名称 Name | 直链淀粉含量 Amylose content/% | 序号 Number | 名称 Name | 直链淀粉含量 Amylose content/% |
---|---|---|---|---|---|
1 | C45 | 15.43±0.30 | 12 | 繁35 Fan 35 | 13.86±0.00 |
2 | 繁1 Fan 1 | 14.50±0.04 | 13 | 繁38 Fan 38 | 10.58±0.13 |
3 | 繁3 Fan 3 | 18.12±0.34 | 14 | 繁42 Fan 42 | 16.54±0.13 |
4 | 繁6 Fan 6 | 17.82±0.21 | 15 | 繁43 Fan 43 | 16.80±0.21 |
5 | 繁15 Fan 15 | 17.61±0.34 | 16 | 申CR1 Shen CR1 | 15.69±0.21 |
6 | 繁16 Fan 16 | 18.46±0.17 | 17 | 申CR2 Shen CR2 | 9.64±0.04 |
7 | 繁17 Fan 17 | 17.95±0.09 | 18 | 申CR3 Shen CR3 | 18.50±0.04 |
8 | 繁24 Fan 24 | 15.82±0.17 | 19 | 申CR4 Shen CR4 | 10.20±0.09 |
9 | 申恢26 Shenhui 26 | 17.48±0.13 | 20 | 申CR5 Shen CR5 | 14.07±0.13 |
10 | 繁29 Fan 29 | 16.50±0.09 | 21 | 申CR6 Shen CR6 | 13.39±0.13 |
11 | 繁32 Fan32 | 11.39±0.00 | 22 | 申CR7 Shen CR7 | 14.33±0.13 |
表2 不同水稻恢复系品种直链淀粉含量
Table 2. Amylose content in different restorer rice lines.
序号 Number | 名称 Name | 直链淀粉含量 Amylose content/% | 序号 Number | 名称 Name | 直链淀粉含量 Amylose content/% |
---|---|---|---|---|---|
1 | C45 | 15.43±0.30 | 12 | 繁35 Fan 35 | 13.86±0.00 |
2 | 繁1 Fan 1 | 14.50±0.04 | 13 | 繁38 Fan 38 | 10.58±0.13 |
3 | 繁3 Fan 3 | 18.12±0.34 | 14 | 繁42 Fan 42 | 16.54±0.13 |
4 | 繁6 Fan 6 | 17.82±0.21 | 15 | 繁43 Fan 43 | 16.80±0.21 |
5 | 繁15 Fan 15 | 17.61±0.34 | 16 | 申CR1 Shen CR1 | 15.69±0.21 |
6 | 繁16 Fan 16 | 18.46±0.17 | 17 | 申CR2 Shen CR2 | 9.64±0.04 |
7 | 繁17 Fan 17 | 17.95±0.09 | 18 | 申CR3 Shen CR3 | 18.50±0.04 |
8 | 繁24 Fan 24 | 15.82±0.17 | 19 | 申CR4 Shen CR4 | 10.20±0.09 |
9 | 申恢26 Shenhui 26 | 17.48±0.13 | 20 | 申CR5 Shen CR5 | 14.07±0.13 |
10 | 繁29 Fan 29 | 16.50±0.09 | 21 | 申CR6 Shen CR6 | 13.39±0.13 |
11 | 繁32 Fan32 | 11.39±0.00 | 22 | 申CR7 Shen CR7 | 14.33±0.13 |
图2 不同直链淀粉含量水稻Wx基因型鉴定 A―Wx基因结构和PCR扩增引物,其中黑色方框表示编码区,灰色方框表示非翻译区;B―22个品种的Wx基因型。
Fig. 2. Genotyping of Wx genes in rice with different amylose contents. A, Gene structure and PCR primers for Wx gene, black and grey boxes indicate coding region and untranslated region, respectively. B, Genotype of Wx gene in 22 cultivars.
图4 胶稠度及其与直链淀粉含量的相关性 A―低直链淀粉品种繁32、繁38、申CR2和申CR4的胶稠度与申恢26相比显著增加(**P<0.01);B―胶稠度与直链淀粉含量显著负相关(r=−0.75)。
Fig. 4. Determination of gel consistency and its relationship with amylose content. A, The gel consistency(GC) of low amylose varieties Fan 32, Fan 38, Shen CR2 and Shen CR4 was significantly increased compared to Shenhui 26(**P < 0.01). B, The GC exhibited a significant negative correlation with the amylose content(r=−0.75).
年份 Year | 位点 Locus | 染色体 Chromosome | 遗传区间 Genetic range | 物理区间 Physical range/bp | LOD值 LOD value | 贡献率 PVE/% | 加性效应 Additive effect/% |
---|---|---|---|---|---|---|---|
2020 | qAC1.1 | 1 | ch1-336—ch1-344 | 27 294 708—27 633 625 | 4.03 | 10.76 | ―0.64 |
qAC6.1 | 6 | ch6-42—ch6-44 | 4 722 458—5 120 945 | 5.00 | 13.81 | 0.73 | |
qAC6.2 | 6 | ch6-143—ch6-200 | 7 984 061—9 393 696 | 11.04 | 33.80 | 1.14 | |
2021 | qAC1.2 | 1 | ch1-357—ch1-359 | 27 973 902—28 090 735 | 4.75 | 9.24 | ―0.64 |
qAC5 | 5 | ch5-56—ch5-59 | 7 001 034—7 208 572 | 4.35 | 8.41 | 0.61 | |
qAC6.1 | 6 | ch6-42—ch6-44 | 4 722 458—5 120 945 | 6.10 | 12.44 | 0.75 | |
qAC6.2 | 6 | ch6-143—ch6-200 | 7 984 061—9 393 696 | 13.87 | 32.14 | 1.20 |
表3 控制稻米直链淀粉含量基因的QTL定位
Table 3. Preliminary mapping of QTL for genes controlling amylose content in rice.
年份 Year | 位点 Locus | 染色体 Chromosome | 遗传区间 Genetic range | 物理区间 Physical range/bp | LOD值 LOD value | 贡献率 PVE/% | 加性效应 Additive effect/% |
---|---|---|---|---|---|---|---|
2020 | qAC1.1 | 1 | ch1-336—ch1-344 | 27 294 708—27 633 625 | 4.03 | 10.76 | ―0.64 |
qAC6.1 | 6 | ch6-42—ch6-44 | 4 722 458—5 120 945 | 5.00 | 13.81 | 0.73 | |
qAC6.2 | 6 | ch6-143—ch6-200 | 7 984 061—9 393 696 | 11.04 | 33.80 | 1.14 | |
2021 | qAC1.2 | 1 | ch1-357—ch1-359 | 27 973 902—28 090 735 | 4.75 | 9.24 | ―0.64 |
qAC5 | 5 | ch5-56—ch5-59 | 7 001 034—7 208 572 | 4.35 | 8.41 | 0.61 | |
qAC6.1 | 6 | ch6-42—ch6-44 | 4 722 458—5 120 945 | 6.10 | 12.44 | 0.75 | |
qAC6.2 | 6 | ch6-143—ch6-200 | 7 984 061—9 393 696 | 13.87 | 32.14 | 1.20 |
图6 2020年(A)和2021年(B)来源于申恢26/繁38的DH群体直链淀粉含量的QTL定位
Fig. 6. QTL mapping for amylose content of DH population derived from Shenhui 26/Fan 38 in 2020(A) and 2021(B).
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