
中国水稻科学 ›› 2026, Vol. 40 ›› Issue (2): 244-252.DOI: 10.16819/j.1001-7216.2026.250204
张梦柯1,#, 陆佳雨2,#, 何金3, 许学2, 吴爽2, 王沛然2, 陈若凡2, 金青1,*(
), 汪秀峰2,*(
)
收稿日期:2025-02-14
修回日期:2025-07-15
出版日期:2026-03-10
发布日期:2026-03-16
通讯作者:
* email: qingjin@ahau.edu.cn; xiufengwang66@sohu.com作者简介:#共同第一作者
基金资助:
ZHANG Mengke1,#, LU Jiayu2,#, HE Jin3, XU Xue2, WU Shuang2, WANG Peiran2, CHEN Ruofan2, JIN Qing1,*(
), WANG Xiufeng2,*(
)
Received:2025-02-14
Revised:2025-07-15
Online:2026-03-10
Published:2026-03-16
Contact:
* email: qingjin@ahau.edu.cn; xiufengwang66@sohu.comAbout author:sup>#These authors contributed equally to this work
摘要:
【目的】开发稳定、高效、可靠的三系杂交种纯度检测标记,对于当前三系水稻制种而言至关重要。【方法】根据野败型不育基因WA352、主效恢复基因Rf4和内参基因Actin的特异性序列,设计了多对单基因检测标记,并通过调整引物混合比例,进行PCR扩增。【结果】引物WA352-2、Rf4-3和Actin-3按照1∶11∶3的比例混合可实现单次PCR扩增同时检测WA352、Rf4和Actin的基因类型,区分野败型不育系、恢复系、保持系和杂交种。【结论】本研究开发的检测标记操作方法简便,结果稳定可靠,不仅能够检测野败型三系水稻的基因型,还可以作为分子标记辅助育种的有效工具,提高育种过程中纯度检测结果的准确性,从而为我国水稻高产优质育种目标的实现提供有力支持。
张梦柯, 陆佳雨, 何金, 许学, 吴爽, 王沛然, 陈若凡, 金青, 汪秀峰. 水稻野败型三系杂交种纯度检测功能标记的开发与应用[J]. 中国水稻科学, 2026, 40(2): 244-252.
ZHANG Mengke, LU Jiayu, HE Jin, XU Xue, WU Shuang, WANG Peiran, CHEN Ruofan, JIN Qing, WANG Xiufeng. Development and Application of Functional Markers for Purity Identification of Wild-abortive Three-line Hybrid Rice[J]. Chinese Journal OF Rice Science, 2026, 40(2): 244-252.
| 引物名称 Primer name | 引物序列 Primer sequence | 目标基因 Target gene | 目的条带大小 Target band size(bp) |
|---|---|---|---|
| WA352-1 | F: GTGCTTAAATCACTACAGGAGCG R: CCCTGGAAGCGGTTGATTGA | WA352 | 528 |
| WA352-2 | F: GAGGATTTTGCCTCCCCTCC R: GGTGCAACCTAGCCAAGTCT | WA352 | 604 |
| WA352-3 | F: GCTTACGCTATGGAGAACCCT R: TTCCCCCGTGCTTTCTTGA | WA352 | 93 |
| Rf4-1 | F: CTTTAGTTCAATAATTAGCGATCT R: TGACATTGGGCTTCACACCA | Rf4 | 101 |
| Rf4-2 | F: CTTTAGTTCAATAATTAGCGATCT R: ACCAGCTAAGCAGCATCCAT | Rf4 | 142 |
| Rf4-3 | F: CTTTAGTTCAATAATTAGCGATCT R: ACTAACGCGTCTTCCATCCT | Rf4 | 267 |
| Actin-1 | F: GCTCCTGAGGAACATCCAATTT R: AGCCACATACATTGCTGGTG | Actin | 117 |
| Actin-2 | F: GGTTTGATTCTTATACCATTGTCCA R: GGGCATCATCACCAGCAAAA | Actin | 115 |
| Actin-3 | F: GAGGAACATCCAATTTTGCTGA R: CACATACATTGCTGGTGCATT | Actin | 108 |
表1 PCR扩增引物序列信息
Table 1. Sequence of PCR amplification primers
| 引物名称 Primer name | 引物序列 Primer sequence | 目标基因 Target gene | 目的条带大小 Target band size(bp) |
|---|---|---|---|
| WA352-1 | F: GTGCTTAAATCACTACAGGAGCG R: CCCTGGAAGCGGTTGATTGA | WA352 | 528 |
| WA352-2 | F: GAGGATTTTGCCTCCCCTCC R: GGTGCAACCTAGCCAAGTCT | WA352 | 604 |
| WA352-3 | F: GCTTACGCTATGGAGAACCCT R: TTCCCCCGTGCTTTCTTGA | WA352 | 93 |
| Rf4-1 | F: CTTTAGTTCAATAATTAGCGATCT R: TGACATTGGGCTTCACACCA | Rf4 | 101 |
| Rf4-2 | F: CTTTAGTTCAATAATTAGCGATCT R: ACCAGCTAAGCAGCATCCAT | Rf4 | 142 |
| Rf4-3 | F: CTTTAGTTCAATAATTAGCGATCT R: ACTAACGCGTCTTCCATCCT | Rf4 | 267 |
| Actin-1 | F: GCTCCTGAGGAACATCCAATTT R: AGCCACATACATTGCTGGTG | Actin | 117 |
| Actin-2 | F: GGTTTGATTCTTATACCATTGTCCA R: GGGCATCATCACCAGCAAAA | Actin | 115 |
| Actin-3 | F: GAGGAACATCCAATTTTGCTGA R: CACATACATTGCTGGTGCATT | Actin | 108 |
图1 目的基因WA352上引物结合位点及WA352引物扩增结果 A为目的基因WA352上引物结合位点,括号中数字是以DNA序列5’端第1个碱基为起点,引物在基因组序列上的坐标; B为WA352引物的扩增结果,1: 不育系恒丰A;2: 恢复系银占3号;3: 杂交种荃优丝苗;4: 保持系沪旱7B; PN: 引物名; M: DL2000 DNA 标记(100~2000 bp)。
Fig. 1. Schematic diagram of primer binding sites on the target gene WA352 and WA352 primer amplification results A, Primer binding sites on the target gene WA352. The numbers in parentheses represent the coordinates of the primers on the genomic sequence, with the first base at the 5' end of the DNA sequence as the starting point; B, Amplification results of WA352 primers. 1, CMS line Hengfeng A; 2, Restorer line Yinzhan 3; 3, Hybrid variety Quanyousimiao; 4, Maintainer line Huhan7 B; PN, Primer name; M, DL2000 DNA marker (100-2000 bp).
图2 目的基因Rf4上引物结合位点以及Rf4引物扩增结果 A: 目的基因Rf4上引物结合位点,括号中数字是以DNA序列5’端第1个碱基为起点,引物在基因组序列上的坐标,针对Rf4的三条特异性引物均采用相同的F端引物;B: Rf4引物扩增结果。1: 不育系恒丰A;2: 恢复系银占3号;3: 杂交种荃优丝苗;4: 保持系沪旱7B; PN: 引物名; M: DL2000 DNA 标记 (100~2000 bp)。
Fig. 2. Schematic diagram of primer binding sites on the target gene Rf4 and Rf4 primer amplification results A, Primer binding sites on the target gene Rf4. The numbers in parentheses represent the coordinates of the primers on the genomic sequence, with the first base at the 5' end of the DNA sequence as the starting point. The three specific primers for Rf4 adopt the same F-primer; B, Amplification results of Rf4 primers; 1, CMS line Hengfeng A; 2, Restorer line Yinzhan 3; 3, Hybrid variety Quanyousimiao; 4, Maintainer line Huhan 7B; PN, Primer name;M, DL2000 DNA marker (100-2000 bp).
图3 目的基因Actin上引物结合位点及Actin引物扩增结果 A: 目的基因Actin上引物结合位点示意图,括号中数字是以DNA序列5’端第1个碱基为起点,引物在基因组序列上的坐标;B: Actin引物扩增结果; 1: 不育系恒丰A;2: 恢复系银占3号;3: 杂交种荃优丝苗;4: 保持系沪旱7B。PN: 引物名; M: DL2000 DNA标记(100~2000 bp)。
Fig. 3. Schematic diagram of primer binding sites on the target gene Actin and amplification results of Actin primers A, Primer binding sites on the target gene Rf4. The numbers in parentheses represent the coordinates of the primers on the genomic sequence, with the first base at the 5' end of the DNA sequence as the starting point; B, Amplification results of Actin primers; 1, CMS line Hengfeng A; 2, Restorer line Yinzhan 3; 3, Hybrid variety Quanyousimiao; 4, Maintainer line Huhan 7B; PN, Primer name; M, DL2000 DNA marker (100-2000 bp).
图4 引物组合的初次筛选结果 1: 不育系恒丰A;2: 恢复系银占3号;3: 杂交种荃优丝苗;4: 保持系沪旱7B;PR: 引物WA352-2、Rf4-3、Actin-3的比例; M: DL2000 DNA 标记(100~2000 bp)。
Fig. 4. Initial screening results of primer combinations 1, CMS line Hengfeng A; 2, Restorer line Yinzhan 3; 3, Hybrid Quanyousimiao; 4, Maintainer line Huhan 7B; PR, Primer ratio of WA352-2, Rf4-3 and Actin-3; M, DL2000 DNA marker (100-2000 bp).
图5 引物组合的方法优化结果 A: 第一次引物组合比例优化结果;B: 第二次引物组合比例优化结果,1: 不育系恒丰A;2: 恢复系银占3号;3: 杂交种荃优丝苗;4: 保持系沪旱7B;PR: 引物WA352-2:Rf4-3:Actin-3,M-DL2000 DNA 标记(100-2000 bp)。
Fig. 5. Optimization results of primer combinations A, First primer combination ratio optimization results; B, Second primer combination ratio optimization results, 1, CMS line Hengfeng A; 2, Restorer line Yinzhan 3; 3, Hybrid Quanyousimiao; 4, Maintainer line Huhan 7B; PR, Primer ratio of WA352-2, Rf4-3 and Actin-3; M, DL2000 DNA marker (100-2000 bp).
图6 WRA-F/R引物在不同水稻材料中的扩增情况 A: 以恢复系水稻基因组DNA为模板。泳道1: 银占3号;2: 岳恢9712;3: 乐占;4: 美香新占;5: R2117;6: 绿丝苗;7: 粤禾丝苗;B:以不育系水稻基因组DNA为模板。其中, 泳道8: 恒丰A;9: 沪旱7A;10: 龙特甫A;11: 荷丰A;编号12,明太A;编号13,五丰A;编号14,广8A;C:以杂交种水稻基因组DNA为模板,其中泳道编号15,荃广优4号;16: 荃优丝苗;17: 深优粤禾丝苗;18: 五优晶丝苗;19: 宜优粤禾丝苗;20: 筑优110;21: 荃早优丝苗;D:以常规水稻基因组DNA为模板。其中, 泳道22,中花11;23: 广陆矮4号;24: 蜀恢498;25: 日本晴;26: 9311; 27: 台中65;28: 南京11; 24: 蜀恢498为恢复系; M: DL2000 DNA Marker (100-2000 bp)。
Fig. 6. Amplification results of WRA-F/R primers in different rice materials A, Using genomic DNA from restorer line rice as the template. Lane 1, Yizhan 3; Lane 2, Yuehui 9712; Lane 3, Yuezhan; Lane 4, Meixiangxinzhan; Lane 5, R2117; Lane 6, Lvsimiao; Lane 7, Yuehesimiao; B: Using genomic DNA from CMS line rice as the template. Lane 8 is Hengfeng A ; Lane 9, Huhan7A; Lane 10, Longtefu A; Lane 11, Hefeng A; Lane 12, Mingtai A;Lane 13,WufengA; Lane 14, Guang8A; C, Using genomic DNA from hybrid rice as the template, lane Lane 15, Quanguangyou 4; Lane 16, Quanyousimiao; Lane 17, Shenyouyuehesimiao; Lane 18, Wuyoujingsimiao; Lane 19, Yiyouyuehesimiao;Lane 20, Zhuyou 110; Lane 21, Quanzaoyousimiao; D, Using genomic DNA from conventional rice as the template, Lane 22 is Zhonghua11; Lane 23, Guangluai4; Lane 24, Shuhui498; Lane 25, Nipponbare; Lane 26, 9311;Lane 27, Taizhong 65; Lane 28, Nanjing 11, where Shuhui 498 is the restorer line, M, DL2000 DNA marker (100-2000 bp).
图7 WRA-F/R引物对野败型三系水稻杂交种样品的单株琼脂糖凝胶电泳检测结果 A: 每条泳道对应的DNA均来自样品1育苗后随机抽取的192株幼苗中的一株;B: 每条泳道对应的DNA均来自样品2随机抽取的192株幼苗的一株; M: DL2000 DNA 标记 (100~2000 bp)。
Fig. 7. Detection results of WRA-F/R primers on single-plant agarose gel electrophoresis of the wild-abortive three-line hybrid rice samples A, DNA profile of Sample #1, with each lane corresponding to DNA extracted from one of 192 randomly selected rice seedlings post-nursery cultivation. B, DNA profile of Sample #2, with each lane corresponding to DNA extracted from one of 192 randomly selected rice seedlings. M, DL2000 DNA marker (100-2000 bp).
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