Chinese Journal OF Rice Science ›› 2024, Vol. 38 ›› Issue (1): 13-24.DOI: 10.16819/j.1001-7216.2024.230602
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HOU Benfu1,2,3, YANG Chuanming1,2,3, ZHANG Xijuan2,5, YANG Xianli2,5, WANG Lizhi2,5, WANG Jiayu4, LI Hongyu1,*(), JIANG Shukun2,3,5,*()
Received:
2023-05-13
Revised:
2023-07-14
Online:
2024-01-10
Published:
2024-01-16
Contact:
* email: 侯本福1,2,3, 杨传铭1,2,3, 张喜娟2,5, 杨贤莉2,5, 王立志2,5, 王嘉宇4, 李红宇1,*(), 姜树坤2,3,5,*()
通讯作者:
* email: 基金资助:
HOU Benfu, YANG Chuanming, ZHANG Xijuan, YANG Xianli, WANG Lizhi, WANG Jiayu, LI Hongyu, JIANG Shukun. Mapping of Grain Shape QTLs Using RIL Population from Longdao 5/Zhongyouzao 8[J]. Chinese Journal OF Rice Science, 2024, 38(1): 13-24.
侯本福, 杨传铭, 张喜娟, 杨贤莉, 王立志, 王嘉宇, 李红宇, 姜树坤. 利用龙稻5号/中优早8号RIL群体定位粒形QTL[J]. 中国水稻科学, 2024, 38(1): 13-24.
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URL: http://www.ricesci.cn/EN/10.16819/j.1001-7216.2024.230602
年份Year | 性状 Trait | 亲本 Parents | 群体 Population | |||||
---|---|---|---|---|---|---|---|---|
龙稻5号 Longdao 5 | 中优早8号 Zhongyouzao 8 | 平均值 Mean | 群体区间 Range | 偏度 Skewness | 峰度 Kurtosis | |||
2020 | 粒长 Grain length /mm | 6.81±0.33 | 8.98±0.38** | 8.18±0.62 | 6.43~9.65 | 0.11 | −0.45 | |
粒宽 Grain width /mm | 3.43±0.21 | 3.24±0.13** | 3.30±0.25 | 2.65~3.94 | 0.05 | −0.26 | ||
粒厚 Grain thickness/mm | 2.13±0.07 | 1.96±0.18* | 1.98±0.15 | 1.53~2.33 | −0.07 | 0.16 | ||
长宽比 Length to width ratio | 1.99±0.14 | 2.78±0.16** | 2.50±0.26 | 1.91~3.38 | 0.48 | 0.33 | ||
2021 | 粒长 Grain length /mm | 6.53±0.30 | 8.67±0.30** | 7.73±0.59 | 6.24~9.30 | 0.08 | −0.31 | |
粒宽 Grain width/mm | 3.50±0.10 | 3.20±0.13** | 3.28±0.26 | 2.68~3.89 | 0.02 | −0.48 | ||
粒厚 Grain thickness | 2.10±0.04 | 1.93±0.22* | 1.96±0.14 | 1.54~2.36 | −0.11 | 0.03 | ||
长宽比 Length to width ratio | 1.86±0.08 | 2.72±0.13** | 2.37±0.24 | 1.80~3.41 | 0.56 | 1.27 | ||
2022 | 粒长 Grain length/mm | 6.86±0.27 | 9.04±0.24** | 8.08±0.64 | 6.35~9.67 | 0.09 | −0.53 | |
粒宽 Grain width /mm | 3.48±0.15 | 3.22±0.17** | 3.29±0.24 | 2.71~3.88 | 0.00 | −0.53 | ||
粒厚 Grain thickness /mm | 2.08±0.08 | 1.92±0.06** | 1.95±0.14 | 1.60~2.29 | −0.01 | −0.25 | ||
长宽比 Length to width ratio | 1.98±0.12 | 2.82±0.15** | 2.48±0.26 | 1.87~3.48 | 0.53 | 0.94 |
Table 1. Phenotypic analysis of grain shape related traits of parents and RIL population.
年份Year | 性状 Trait | 亲本 Parents | 群体 Population | |||||
---|---|---|---|---|---|---|---|---|
龙稻5号 Longdao 5 | 中优早8号 Zhongyouzao 8 | 平均值 Mean | 群体区间 Range | 偏度 Skewness | 峰度 Kurtosis | |||
2020 | 粒长 Grain length /mm | 6.81±0.33 | 8.98±0.38** | 8.18±0.62 | 6.43~9.65 | 0.11 | −0.45 | |
粒宽 Grain width /mm | 3.43±0.21 | 3.24±0.13** | 3.30±0.25 | 2.65~3.94 | 0.05 | −0.26 | ||
粒厚 Grain thickness/mm | 2.13±0.07 | 1.96±0.18* | 1.98±0.15 | 1.53~2.33 | −0.07 | 0.16 | ||
长宽比 Length to width ratio | 1.99±0.14 | 2.78±0.16** | 2.50±0.26 | 1.91~3.38 | 0.48 | 0.33 | ||
2021 | 粒长 Grain length /mm | 6.53±0.30 | 8.67±0.30** | 7.73±0.59 | 6.24~9.30 | 0.08 | −0.31 | |
粒宽 Grain width/mm | 3.50±0.10 | 3.20±0.13** | 3.28±0.26 | 2.68~3.89 | 0.02 | −0.48 | ||
粒厚 Grain thickness | 2.10±0.04 | 1.93±0.22* | 1.96±0.14 | 1.54~2.36 | −0.11 | 0.03 | ||
长宽比 Length to width ratio | 1.86±0.08 | 2.72±0.13** | 2.37±0.24 | 1.80~3.41 | 0.56 | 1.27 | ||
2022 | 粒长 Grain length/mm | 6.86±0.27 | 9.04±0.24** | 8.08±0.64 | 6.35~9.67 | 0.09 | −0.53 | |
粒宽 Grain width /mm | 3.48±0.15 | 3.22±0.17** | 3.29±0.24 | 2.71~3.88 | 0.00 | −0.53 | ||
粒厚 Grain thickness /mm | 2.08±0.08 | 1.92±0.06** | 1.95±0.14 | 1.60~2.29 | −0.01 | −0.25 | ||
长宽比 Length to width ratio | 1.98±0.12 | 2.82±0.15** | 2.48±0.26 | 1.87~3.48 | 0.53 | 0.94 |
Fig. 2. Comparison of grain shape traits between two parents. LD5, Longdao 5; ZYZ8, Zhongyouzao 8. * and ** represent significant difference between two parents at the 0.05 and 0.01 levels, respectively.
QTL | Chr. | 标记区间 Marker interval | 2020 | 2021 | 2022 | 增效等位 基因来源 Positive allele | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LOD | 表型 贡献率Var./% | 加性 效应Add. | LOD | 表型 贡献率Var./% | 加性 效应 Add. | LOD | 表型 贡献率Var./% | 加性 效应 Add. | |||||||||
qGL3 | 3 | R3M30−RM3513 | 8.05 | 18.52 | 0.28 | 7.69 | 16.52 | 0.28 | 8.74 | 18.89 | 0.31 | ZYZ8 | |||||
qGL7 | 7 | RM3404−RM11 | 2.90 | 5.37 | 0.16 | 3.33 | 5.73 | 0.16 | 2.90 | 5.30 | 0.16 | ZYZ8 | |||||
qGL11 | 11 | RM1124−STS11.1 | 2.52 | 4.69 | 0.14 | ZYZ8 | |||||||||||
qGW3 | 3 | STS3.10−RM3684 | 4.46 | 9.53 | −0.09 | 4.44 | 9.13 | −0.09 | 4.03 | 8.54 | −0.08 | LD5 | |||||
qGW5 | 5 | R5M13−RM3476 | 3.20 | 7.48 | −0.08 | 3.94 | 9.22 | −0.09 | 3.21 | 7.8 | −0.08 | LD5 | |||||
qGT3 | 3 | RM503−RM700 | 3.21 | 8.05 | −0.05 | 3.70 | 9.34 | −0.04 | 2.76 | 6.36 | −0.04 | LD5 | |||||
qGT6 | 6 | RM3827−RM1340 | 2.53 | 6.09 | 0.04 | ZYZ8 | |||||||||||
qLWR3a | 3 | R3M30−RM3513 | 5.34 | 12.46 | 0.10 | 5.76 | 13.33 | 0.10 | 6.10 | 14.33 | 0.11 | ZYZ8 |
Table 2. BIP-QTL mapping of grain shape traits in rice RIL population.
QTL | Chr. | 标记区间 Marker interval | 2020 | 2021 | 2022 | 增效等位 基因来源 Positive allele | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LOD | 表型 贡献率Var./% | 加性 效应Add. | LOD | 表型 贡献率Var./% | 加性 效应 Add. | LOD | 表型 贡献率Var./% | 加性 效应 Add. | |||||||||
qGL3 | 3 | R3M30−RM3513 | 8.05 | 18.52 | 0.28 | 7.69 | 16.52 | 0.28 | 8.74 | 18.89 | 0.31 | ZYZ8 | |||||
qGL7 | 7 | RM3404−RM11 | 2.90 | 5.37 | 0.16 | 3.33 | 5.73 | 0.16 | 2.90 | 5.30 | 0.16 | ZYZ8 | |||||
qGL11 | 11 | RM1124−STS11.1 | 2.52 | 4.69 | 0.14 | ZYZ8 | |||||||||||
qGW3 | 3 | STS3.10−RM3684 | 4.46 | 9.53 | −0.09 | 4.44 | 9.13 | −0.09 | 4.03 | 8.54 | −0.08 | LD5 | |||||
qGW5 | 5 | R5M13−RM3476 | 3.20 | 7.48 | −0.08 | 3.94 | 9.22 | −0.09 | 3.21 | 7.8 | −0.08 | LD5 | |||||
qGT3 | 3 | RM503−RM700 | 3.21 | 8.05 | −0.05 | 3.70 | 9.34 | −0.04 | 2.76 | 6.36 | −0.04 | LD5 | |||||
qGT6 | 6 | RM3827−RM1340 | 2.53 | 6.09 | 0.04 | ZYZ8 | |||||||||||
qLWR3a | 3 | R3M30−RM3513 | 5.34 | 12.46 | 0.10 | 5.76 | 13.33 | 0.10 | 6.10 | 14.33 | 0.11 | ZYZ8 |
数量性状基因 | 染色体 | 标记区间 | LOD值 | 表型贡献率 | 加性效应 |
---|---|---|---|---|---|
QTL | Chr. | Marker interval | LOD value | Var./% | Add. |
qGL2 | 2 | RM6933―ID2 | 4.20 | 3.14 | 0.12 |
qGL3 | 3 | R3M30―RM3513 | 20.90 | 15.78 | 0.26 |
qGL7 | 7 | RM3404―RM11 | 8.26 | 5.02 | 0.15 |
qGL11 | 11 | RM1124―STS11.1 | 8.51 | 5.85 | 0.16 |
qGW3 | 3 | STS3.10―RM3684 | 6.20 | 4.55 | ―0.06 |
qGW5 | 5 | STS5.2―RM3476 | 10.85 | 9.43 | ―0.08 |
qGT3 | 3 | RM503―RM7000 | 6.83 | 5.26 | ―0.34 |
qGT5 | 5 | R5M13―RM3476 | 4.84 | 4.37 | ―0.31 |
qGT6 | 6 | RM3827―RM1340 | 5.07 | 3.85 | 0.29 |
qLWR3a | 3 | R3M30―RM3513 | 16.61 | 8.71 | 0.10 |
qLWR3b | 3 | STS3.10―RM3684 | 14.77 | 9.96 | 0.11 |
qLWR5 | 5 | STS5.2―RM3476 | 4.64 | 2.01 | 0.05 |
qLWR7 | 7 | RM3404―RM11 | 6.97 | 3.40 | 0.06 |
qLWR11 | 11 | RM1124―STS11.1 | 4.99 | 2.28 | 0.05 |
Table 3. MET-QTL mapping of grain shape traits in rice RIL population.
数量性状基因 | 染色体 | 标记区间 | LOD值 | 表型贡献率 | 加性效应 |
---|---|---|---|---|---|
QTL | Chr. | Marker interval | LOD value | Var./% | Add. |
qGL2 | 2 | RM6933―ID2 | 4.20 | 3.14 | 0.12 |
qGL3 | 3 | R3M30―RM3513 | 20.90 | 15.78 | 0.26 |
qGL7 | 7 | RM3404―RM11 | 8.26 | 5.02 | 0.15 |
qGL11 | 11 | RM1124―STS11.1 | 8.51 | 5.85 | 0.16 |
qGW3 | 3 | STS3.10―RM3684 | 6.20 | 4.55 | ―0.06 |
qGW5 | 5 | STS5.2―RM3476 | 10.85 | 9.43 | ―0.08 |
qGT3 | 3 | RM503―RM7000 | 6.83 | 5.26 | ―0.34 |
qGT5 | 5 | R5M13―RM3476 | 4.84 | 4.37 | ―0.31 |
qGT6 | 6 | RM3827―RM1340 | 5.07 | 3.85 | 0.29 |
qLWR3a | 3 | R3M30―RM3513 | 16.61 | 8.71 | 0.10 |
qLWR3b | 3 | STS3.10―RM3684 | 14.77 | 9.96 | 0.11 |
qLWR5 | 5 | STS5.2―RM3476 | 4.64 | 2.01 | 0.05 |
qLWR7 | 7 | RM3404―RM11 | 6.97 | 3.40 | 0.06 |
qLWR11 | 11 | RM1124―STS11.1 | 4.99 | 2.28 | 0.05 |
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