Chinese Journal OF Rice Science ›› 2018, Vol. 32 ›› Issue (1): 1-11.DOI: 10.16819/j.1001-7216.2018.7016
• Orginal Article • Next Articles
Xi LIU1, Changling MOU1, Chunlei ZHOU1, Zhijun CHENG2, Ling JIANG1,*(), Jianmin WAN1,2
Received:
2017-02-07
Revised:
2017-04-20
Online:
2018-01-10
Published:
2018-01-10
Contact:
Ling JIANG
刘喜1, 牟昌铃1, 周春雷1, 程治军2, 江玲1,*(), 万建民1,2
通讯作者:
江玲
基金资助:
CLC Number:
Xi LIU, Changling MOU, Chunlei ZHOU, Zhijun CHENG, Ling JIANG, Jianmin WAN. Research Progress on Cloning and Regulation Mechanism of Rice Grain Shape Genes[J]. Chinese Journal OF Rice Science, 2018, 32(1): 1-11.
刘喜, 牟昌铃, 周春雷, 程治军, 江玲, 万建民. 水稻粒型基因克隆和调控机制研究进展[J]. 中国水稻科学, 2018, 32(1): 1-11.
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URL: http://www.ricesci.cn/EN/10.16819/j.1001-7216.2018.7016
基因 Gene | Chr. | 功能 Function | 突变体,表型 Mutant, phenotype | 参考文献 Reference | ||||
---|---|---|---|---|---|---|---|---|
D2/SMG11 | 1 | 细胞色素P450加氧酶,参与BR生物合成 | 隐性突变体,小粒 | [10-11] | ||||
D61/OsBRI1 | 1 | BR受体激酶 | 隐性突变体,小粒 | [12-15] | ||||
RAV6 | 2 | B3 DNA结合结构域蛋白,介导油菜素内酯稳态,受表观遗传修饰调控 | 显性突变体,小粒 | [16] | ||||
SDG725 | 2 | H3K36 甲基转移酶,参与调节BR相关基因的表达 | 隐性突变体,小粒 | [17-18] | ||||
SMG1 | 2 | 有丝分裂激活的蛋白激酶激酶4,可能作为MAPK通路和BR间连接因子 | 隐性突变体,小粒 | [19] | ||||
TH1/AFD1 | 2 | DUF640结构域的蛋白,影响细胞分裂和扩张 | 隐性突变体,小粒 | [20-21] | ||||
FUWA | 2 | NHL结构域蛋白,限制细胞过度分裂 | 隐性突变体,小粒 | [22] | ||||
GW2 | 2 | 环型E3泛素连接酶,负调节细胞分裂 | 隐性突变体,宽粒 | [23-25] | ||||
OsGRF4/GS2/GL2 | 2 | 生长调控因子,与BR负调控因子GSK2互作 | 转基因过表达株,大粒 | [26-28] | ||||
PGL2 | 2 | 非典型的不结合DNA的碱性螺旋-环-螺旋蛋白,与APG互作 | 转基因过表达株,长粒 | [29] | ||||
BG1 | 3 | 未知蛋白,参与调节生长素的转运 | 隐性突变体,小粒 | [30] | ||||
PGL1 | 3 | 非典型的不结合DNA的碱性螺旋-环-螺旋蛋白 | 转基因过表达株,长粒 | [31] | ||||
RGB1 | 3 | G蛋白β亚基,正向调控细胞增殖 | 隐性突变体,小粒 | [32-33] | ||||
GS3 | 3 | G蛋白的γ亚基,负调控粒重 | 转基因过表达株,长粒 | [34-38] | ||||
OsPPKL1/GL3.1 | 3 | 蛋白磷酸酶,调控细胞周期蛋白T1;3 | 转基因干扰株,长粒 | [39-41] | ||||
BRD1/OsBR6ox | 3 | 细胞色素P450加氧酶,参与BR生物合成 | 隐性突变体,小粒 | [42-43] | ||||
LTS1/OsNaPRT1 | 3 | 烟酸磷酸核糖转移酶,影响烟酰胺的含量 | 隐性突变体,小粒 | [44] | ||||
TUD1 | 3 | U-box家族的E3泛素连接酶,参与BR应答 | 隐性突变体,短粒 | [45] | ||||
XIAO | 4 | LRR 激酶,调控BR信号传递和动态平衡以及细胞周期 | 隐性突变体,小粒 | [46] | ||||
D11/CPB1 | 4 | 细胞色素P450加氧酶,参与BR生物合成 | 隐性突变体,小粒 | [47-48] | ||||
An-1 | 4 | bHLH转录因子,调控细胞分裂 | 隐性突变体,短粒 | [49] | ||||
OsBSK3 | 4 | BR信号激酶 | 转基因干扰株,小粒 | [50] | ||||
Flo2 | 4 | 含TPR结构域蛋白 | 隐性突变体,小粒 | [51] | ||||
GW5/qSW5 | 5 | 核蛋白,调节细胞分裂 | 转基因干扰株,宽粒 | [52-53] | ||||
GS5 | 5 | 丝氨酸羧肽酶,与 BAK1互作,参与BR信号 | 转基因过表达株,大粒 | [54-55] | ||||
GSK2 | 5 | 与拟南芥BIN2同源的类GSK3/SHAGGY激酶,BR信号负调控因子 | 转基因干扰株,大粒 | [56] | ||||
OsCYP51G3 | 5 | 钝叶醇14α-脱甲基酶 | 转基因干扰株,短粒 | [57] | ||||
OsLAC | 5 | 漆酶蛋白,影响BR信号 | 转基因干扰株,大粒 | [58] | ||||
SRS3 | 5 | 驱动蛋白13 基因家族成员,影响细胞纵向长度 | 隐性突变体,小圆粒 | [59] | ||||
OsPPKL2 | 5 | 含有Kelch重复域的蛋白磷酸酶,正向调控粒长 | 转基因过表达株,长粒 | [41] | ||||
APG | 5 | bHLH蛋白,PGL1拮抗因子 | 转基因干扰株,长粒 | [29] | ||||
D1 | 5 | G蛋白亚基,调控细胞分裂 | 隐性突变体,小粒 | [60-63] | ||||
TGW6 | 6 | IAA-葡萄糖水解酶,水解IAA-葡萄糖成IAA和葡萄糖 | 转基因干扰株,大粒 | [64] | ||||
GW6a | 6 | 组蛋白乙酰转移酶,增加细胞数和加速灌浆速率,增大颖壳 | 转基因干扰株,小粒 | [65] | ||||
GS6/DLT | 6 | GRAS基因家族,BR信号基因 | 隐性突变体,小粒 | [66-67] | ||||
BU1 | 6 | 螺旋-环-螺旋蛋白,BR信号基因 | 转基因过表达株,大粒 | [68] | ||||
OsARF19 | 6 | 生长素响应因子 | 转基因过表达株,瘪粒 | [69] | ||||
HGW | 6 | 泛素相关结构域蛋白,可能直接通过GIF1 控制水稻籽粒和质量 | 隐性突变体,细长粒 | [70] | ||||
OsMAPK6/DSG1 | 6 | 有丝分裂激活的蛋白激酶,影响细胞增殖以及BR信号和稳态 | 隐性突变体,小粒 | [71] | ||||
GL7/GW7/SLG7 | 7 | TONNEAU1募集基序蛋白 | 转基因过表达株,长粒 | [72-74] | ||||
GLW7 | 7 | SPL家族转录因子 | 转基因过表达株,长粒 | [75] | ||||
OsBZR1 | 7 | BR信号因子 | 转基因过表达株,大粒 | [76] | ||||
BG2/GE | 7 | 细胞色素P450加氧酶,促进细胞增殖 | 显性突变体,大粒 | [77-78] | ||||
SRS1/EP2 | 7 | 未知蛋白 | 隐性突变体,小圆粒 | [79-80] | ||||
SLG | 8 | 类BAHD酰基转移酶,调控BR的稳态 | 半显性突变体,细长粒 | [81] | ||||
BAK1 | 8 | BR信号受体BRI1的激酶,BR共受体 | 转基因过表达株,小粒 | [82] | ||||
qGW8/OsSPL16 | 8 | 含SBP结构域的转录因子,结合GW7启动子,抑制其表达 | 转基因过表达株,细长粒 | [83] | ||||
OsFIE1 | 8 | 多梳蛋白抑制复合体的类Esc核心元件,参与H3K27me3介导的基因抑制过程 | 显性突变体,小粒 | [84] | ||||
OsFEI2 | 8 | 具有特异的组蛋白H3甲基转移酶活性,负责组蛋白H3第27位赖氨酸上三甲基化的形成 | 隐性突变体,小粒 | [85] | ||||
GAD1 | 8 | 一个表皮模式因子类蛋白EPFL1,促进细胞分裂 | 转基因干扰株,短粒 | [86] | ||||
GDD1 | 9 | 驱动蛋白4家族基因,控制水稻细胞周期进程和细胞壁的属性 | 隐性突变体,小粒 | [87] | ||||
SG1 | 9 | 未知蛋白,与BR相关 | 转基因干扰株,短粒 | [88] | ||||
DEP1/DN1/qNGR9 | 9 | G蛋白γ亚基 | 隐性突变体,小粒 | [89-93] | ||||
BRD2 | 10 | 拟南芥DIM1/DWF1同源基因,参与BR生物合成 | 隐性突变体,小粒 | [94] | ||||
SRS5/TID1 | 11 | 微管蛋白 | 隐性突变体,小圆粒 | [95-96] | ||||
OsGIF1 | 11 | GRF互作因子 | 转基因过表达株,大粒 | [27] | ||||
OsPPKL3 | 12 | 含有Kelch重复域的蛋白磷酸酶,负向调控粒长 | 转基因过表达株,短粒 | [41] | ||||
miR1848 | 调控靶基因OsCYP51G3 | 转基因过表达株,短粒 | [57] | |||||
miR397 | 调控靶基因OsLAC | 转基因过表达株,大粒 | [58] | |||||
miR396 | 调控靶基因GS2 | 转基因过表达株,小粒 | [27] |
Table 1 Cloned genes for grain shape in rice.
基因 Gene | Chr. | 功能 Function | 突变体,表型 Mutant, phenotype | 参考文献 Reference | ||||
---|---|---|---|---|---|---|---|---|
D2/SMG11 | 1 | 细胞色素P450加氧酶,参与BR生物合成 | 隐性突变体,小粒 | [10-11] | ||||
D61/OsBRI1 | 1 | BR受体激酶 | 隐性突变体,小粒 | [12-15] | ||||
RAV6 | 2 | B3 DNA结合结构域蛋白,介导油菜素内酯稳态,受表观遗传修饰调控 | 显性突变体,小粒 | [16] | ||||
SDG725 | 2 | H3K36 甲基转移酶,参与调节BR相关基因的表达 | 隐性突变体,小粒 | [17-18] | ||||
SMG1 | 2 | 有丝分裂激活的蛋白激酶激酶4,可能作为MAPK通路和BR间连接因子 | 隐性突变体,小粒 | [19] | ||||
TH1/AFD1 | 2 | DUF640结构域的蛋白,影响细胞分裂和扩张 | 隐性突变体,小粒 | [20-21] | ||||
FUWA | 2 | NHL结构域蛋白,限制细胞过度分裂 | 隐性突变体,小粒 | [22] | ||||
GW2 | 2 | 环型E3泛素连接酶,负调节细胞分裂 | 隐性突变体,宽粒 | [23-25] | ||||
OsGRF4/GS2/GL2 | 2 | 生长调控因子,与BR负调控因子GSK2互作 | 转基因过表达株,大粒 | [26-28] | ||||
PGL2 | 2 | 非典型的不结合DNA的碱性螺旋-环-螺旋蛋白,与APG互作 | 转基因过表达株,长粒 | [29] | ||||
BG1 | 3 | 未知蛋白,参与调节生长素的转运 | 隐性突变体,小粒 | [30] | ||||
PGL1 | 3 | 非典型的不结合DNA的碱性螺旋-环-螺旋蛋白 | 转基因过表达株,长粒 | [31] | ||||
RGB1 | 3 | G蛋白β亚基,正向调控细胞增殖 | 隐性突变体,小粒 | [32-33] | ||||
GS3 | 3 | G蛋白的γ亚基,负调控粒重 | 转基因过表达株,长粒 | [34-38] | ||||
OsPPKL1/GL3.1 | 3 | 蛋白磷酸酶,调控细胞周期蛋白T1;3 | 转基因干扰株,长粒 | [39-41] | ||||
BRD1/OsBR6ox | 3 | 细胞色素P450加氧酶,参与BR生物合成 | 隐性突变体,小粒 | [42-43] | ||||
LTS1/OsNaPRT1 | 3 | 烟酸磷酸核糖转移酶,影响烟酰胺的含量 | 隐性突变体,小粒 | [44] | ||||
TUD1 | 3 | U-box家族的E3泛素连接酶,参与BR应答 | 隐性突变体,短粒 | [45] | ||||
XIAO | 4 | LRR 激酶,调控BR信号传递和动态平衡以及细胞周期 | 隐性突变体,小粒 | [46] | ||||
D11/CPB1 | 4 | 细胞色素P450加氧酶,参与BR生物合成 | 隐性突变体,小粒 | [47-48] | ||||
An-1 | 4 | bHLH转录因子,调控细胞分裂 | 隐性突变体,短粒 | [49] | ||||
OsBSK3 | 4 | BR信号激酶 | 转基因干扰株,小粒 | [50] | ||||
Flo2 | 4 | 含TPR结构域蛋白 | 隐性突变体,小粒 | [51] | ||||
GW5/qSW5 | 5 | 核蛋白,调节细胞分裂 | 转基因干扰株,宽粒 | [52-53] | ||||
GS5 | 5 | 丝氨酸羧肽酶,与 BAK1互作,参与BR信号 | 转基因过表达株,大粒 | [54-55] | ||||
GSK2 | 5 | 与拟南芥BIN2同源的类GSK3/SHAGGY激酶,BR信号负调控因子 | 转基因干扰株,大粒 | [56] | ||||
OsCYP51G3 | 5 | 钝叶醇14α-脱甲基酶 | 转基因干扰株,短粒 | [57] | ||||
OsLAC | 5 | 漆酶蛋白,影响BR信号 | 转基因干扰株,大粒 | [58] | ||||
SRS3 | 5 | 驱动蛋白13 基因家族成员,影响细胞纵向长度 | 隐性突变体,小圆粒 | [59] | ||||
OsPPKL2 | 5 | 含有Kelch重复域的蛋白磷酸酶,正向调控粒长 | 转基因过表达株,长粒 | [41] | ||||
APG | 5 | bHLH蛋白,PGL1拮抗因子 | 转基因干扰株,长粒 | [29] | ||||
D1 | 5 | G蛋白亚基,调控细胞分裂 | 隐性突变体,小粒 | [60-63] | ||||
TGW6 | 6 | IAA-葡萄糖水解酶,水解IAA-葡萄糖成IAA和葡萄糖 | 转基因干扰株,大粒 | [64] | ||||
GW6a | 6 | 组蛋白乙酰转移酶,增加细胞数和加速灌浆速率,增大颖壳 | 转基因干扰株,小粒 | [65] | ||||
GS6/DLT | 6 | GRAS基因家族,BR信号基因 | 隐性突变体,小粒 | [66-67] | ||||
BU1 | 6 | 螺旋-环-螺旋蛋白,BR信号基因 | 转基因过表达株,大粒 | [68] | ||||
OsARF19 | 6 | 生长素响应因子 | 转基因过表达株,瘪粒 | [69] | ||||
HGW | 6 | 泛素相关结构域蛋白,可能直接通过GIF1 控制水稻籽粒和质量 | 隐性突变体,细长粒 | [70] | ||||
OsMAPK6/DSG1 | 6 | 有丝分裂激活的蛋白激酶,影响细胞增殖以及BR信号和稳态 | 隐性突变体,小粒 | [71] | ||||
GL7/GW7/SLG7 | 7 | TONNEAU1募集基序蛋白 | 转基因过表达株,长粒 | [72-74] | ||||
GLW7 | 7 | SPL家族转录因子 | 转基因过表达株,长粒 | [75] | ||||
OsBZR1 | 7 | BR信号因子 | 转基因过表达株,大粒 | [76] | ||||
BG2/GE | 7 | 细胞色素P450加氧酶,促进细胞增殖 | 显性突变体,大粒 | [77-78] | ||||
SRS1/EP2 | 7 | 未知蛋白 | 隐性突变体,小圆粒 | [79-80] | ||||
SLG | 8 | 类BAHD酰基转移酶,调控BR的稳态 | 半显性突变体,细长粒 | [81] | ||||
BAK1 | 8 | BR信号受体BRI1的激酶,BR共受体 | 转基因过表达株,小粒 | [82] | ||||
qGW8/OsSPL16 | 8 | 含SBP结构域的转录因子,结合GW7启动子,抑制其表达 | 转基因过表达株,细长粒 | [83] | ||||
OsFIE1 | 8 | 多梳蛋白抑制复合体的类Esc核心元件,参与H3K27me3介导的基因抑制过程 | 显性突变体,小粒 | [84] | ||||
OsFEI2 | 8 | 具有特异的组蛋白H3甲基转移酶活性,负责组蛋白H3第27位赖氨酸上三甲基化的形成 | 隐性突变体,小粒 | [85] | ||||
GAD1 | 8 | 一个表皮模式因子类蛋白EPFL1,促进细胞分裂 | 转基因干扰株,短粒 | [86] | ||||
GDD1 | 9 | 驱动蛋白4家族基因,控制水稻细胞周期进程和细胞壁的属性 | 隐性突变体,小粒 | [87] | ||||
SG1 | 9 | 未知蛋白,与BR相关 | 转基因干扰株,短粒 | [88] | ||||
DEP1/DN1/qNGR9 | 9 | G蛋白γ亚基 | 隐性突变体,小粒 | [89-93] | ||||
BRD2 | 10 | 拟南芥DIM1/DWF1同源基因,参与BR生物合成 | 隐性突变体,小粒 | [94] | ||||
SRS5/TID1 | 11 | 微管蛋白 | 隐性突变体,小圆粒 | [95-96] | ||||
OsGIF1 | 11 | GRF互作因子 | 转基因过表达株,大粒 | [27] | ||||
OsPPKL3 | 12 | 含有Kelch重复域的蛋白磷酸酶,负向调控粒长 | 转基因过表达株,短粒 | [41] | ||||
miR1848 | 调控靶基因OsCYP51G3 | 转基因过表达株,短粒 | [57] | |||||
miR397 | 调控靶基因OsLAC | 转基因过表达株,大粒 | [58] | |||||
miR396 | 调控靶基因GS2 | 转基因过表达株,小粒 | [27] |
Fig. 2. Major pathways of rice grain shape regulation. Grain shape is regulated by five major signaling pathways in rice, including phytohormones, the ubiquitin-proteasome pathway, MAPK signaling, epigenetic modification and G-protein signaling. These regulators control grain shape by influencing cell proliferation and expansion in grain development.
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