Chinese Journal OF Rice Science ›› 2025, Vol. 39 ›› Issue (3): 365-372.DOI: 10.16819/j.1001-7216.2025.240104

• Research Papers • Previous Articles     Next Articles

Development and Application of KASP Marker for Broad-Spectrum Resistance Gene PigmR to Rice Blast

LI Wenqi1,2,3, XU Yang1,2,3, WANG Fangquan1,2,3, ZHU Jianping1,2,3, TAO Yajun1,2,3, LI Xia1,2,3, FAN Fangjun1,2,3, JIANG Yanjie1,2,3, CHEN Zhihui1,2,3, YANG Jie1,2,3,*()   

  1. 1Institute of Food Crops, Jiangsu Academy of Agricultural Sciences/Key Laboratory of Germplasm Innovation in Downstream of Huaihe River (Nanjing), Ministry of Agricultural and Rural Affairs/ Nanjing Branch of Chinese National Center for Rice Improvement, Nanjing 210014, China
    2Zhongshan Biological Breeding Laboratory, Nanjing 210014, China
    3Jiangsu Co-innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China
  • Received:2024-09-08 Revised:2025-02-25 Online:2025-05-10 Published:2025-05-21
  • Contact: *email: yangjie168@aliyun.com

广谱抗稻瘟病基因PigmR的KASP标记开发及应用

李文奇1,2,3, 许扬1,2,3, 王芳权1,2,3, 朱建平1,2,3, 陶亚军1,2,3, 李霞1,2,3, 范方军1,2,3, 蒋彦婕1,2,3, 陈智慧1,2,3, 杨杰1,2,3,*()   

  1. 1江苏省农业科学院 粮食作物研究所/农业农村部淮河下游种质创制重点实验室(南京)/国家水稻改良中心南京分中心,南京 210014
    2生物育种钟山实验室,南京 210014
    3扬州大学 江苏省粮食作物现代产业技术协同创新中心,江苏 扬州 225009
  • 通讯作者: *email: yangjie168@aliyun.com
  • 基金资助:
    江苏省种业振兴揭榜挂帅项目[JBGS(2021)039];江苏省重点研发计划(现代农业)资助项目(BE2021374);国家自然科学基金面上项目(42071023);生物育种钟山实验室项目(BM2022008-03);生物育种钟山实验室项目(1201);生物育种钟山实验室项目(1002);江苏省自然科学基金资助项目(BK20212010)

Abstract:

【Objective】The broad-spectrum resistance gene PigmR has important breeding value for the genetic improvement of rice blast resistance. Developing kompetitive allele specific PCR (KASP) markers based on its coding region variation sites is beneficial for improving the accuracy and efficiency of PigmR utilization in breeding.【Method】This study identified single nucleotide variations in the coding region of PigmR through sequence alignment, developed the KASP molecular marker PigmR-K, conducted genotype analysis using rice varieties and F2 segregating populations, combined these results with rice blast symptom identification, and carried out molecular marker assisted selection breeding to verify the precision and efficiency of this marker.【Result】Based on an A-to-C mutation at position 2503 in the PigmR gene coding region sequence, a precise and efficient PigmR genotyping technology system based on KASP markers was established. The genotyping of 159 rice varieties, 270 F2 individuals, and 247 BC1F3 population lines demonstrated that PigmR-K reliably distinguished the homozygous resistant, homozygous susceptible and heterozygous genotypes of PigmR. These results were completely consistent with disease symptoms from artificial panicle blast inoculation.【Conclusion】The KASP marker PigmR-K developed based on the variation site of on the coding region has advantages such as precision and efficiency, which is beneficial for genetic improvement of rice blast resistance.

Key words: rice, broad-spectrum resistance, rice blast, PigmR gene, KASP, breeding efficiency

摘要:

【目的】广谱抗稻瘟病基因PigmR对水稻抗稻瘟病遗传改良具有重要育种价值。根据其编码区变异位点开发竞争性等位基因特异性PCR(Kompetitive allele specific,PCR KASP)标记,有利于提升PigmR育种利用的效率。【方法】通过序列比对明确PigmR基因编码区存在单核苷酸变异,开发KASP分子标记PigmR-K,通过对水稻品种和F2分离群体进行基因型分析,结合稻瘟病表型鉴定,并开展分子标记辅助选择育种,对标记的精准性和高效性进行验证。【结果】根据PigmR基因编码区序列第2503位存在特异性单核苷酸A>C变异,建立基于KASP的PigmR精准高效基因分型技术体系,通过对159份水稻品种、270份F2群体单株以及247份BC1F3群体单株进行基因型检测,PigmR-K能够高效区分供试水稻材料的纯合抗病、纯合感病和杂合基因型,并与人工接种穗颈瘟症状一致。【结论】利用PigmR基因编码区变异位点开发的KASP标记PigmR-K具有精准高效等优势,有利于稻瘟病抗性遗传改良。

关键词: 水稻, 广谱抗性, 稻瘟病, PigmR基因, KASP, 育种效率