
Chinese Journal OF Rice Science >
A Preliminary Study on the Function of Rice Heading Date Gene OsDof6
Received date: 2020-02-20
Revised date: 2020-05-19
Online published: 2020-09-10
【Objective】Our goal is to further explore the expression pattern and biological function of OsDof6, a rice Dof family transcription factor screened with the panicle development chip in the previous study. 【Method】Bioinformatics approaches were applied to analyze OsDof6 gene, protein and protein promoter sequences. The gene was edited using CRISPR/Cas9 technology. Real-time quantitative PCR and subcellular localization technology was used to reveal the gene expression pattern. 【Result】The gene promoter contains a large number of photo-, hormone-, and stress-responses and tissue expression elements. Then, two mutants of different mutation types 9522Dof6-3 and 9522Dof6-4 were obtained by using CRISPR/Cas9 technology. Through observation of the T1 generation of the mutant materials, we found that the mutants had significantly less tillers and longer heading dates (delayed by 3 days) compared to the control materials. Real-time quantitative PCR results showed that OsDof6 was expressed in varying degrees in the roots, stems, leaves and panicles, and the relative expression was significantly increased at late stages of panicle development. Subcellular localization analysis showed that OsDof6 belongs to a nuclear localization gene. 【Conclusion】OsDof6 gene affects the tiller number and heading date of rice.
Key words: rice; Dof family; heading date; CRISPR/Cas9
Licheng ZHANG, Yixing LI, Tiankang WANG, Mudan QIU, Shufeng SONG, Hao DONG, Lei LI, Jianfeng LIU, Li LI . A Preliminary Study on the Function of Rice Heading Date Gene OsDof6[J]. Chinese Journal OF Rice Science, 2020 , 34(5) : 397 -405 . DOI: 10.16819/j.1001-7216.2020.0211
| [1] | Yanagisawa S, Schmidt R J.Diversity and similarity among recognition sequences of Dof transcription factor[J]. Plant Journal, 1999, 17(2): 209-214. |
| [2] | Riechmann J L, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe O J, Samaha R R, Creelman R, Pilgrim M, Broun P, Zhang J Z, Ghandehari D, Sherman B K, Yu G.Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes[J]. Science, 2000, 290(5499): 2105-2110. |
| [3] | Diaz I, Vicente-Carbajosa J, Abraham Z, Martínez M, Moneda I I L, Carbonero P. The GAMYB protein from barley interacts with the DOF transcription factor BPBF and activates endosperm-specific genes during seed development[J]. Plant Journal, 2002, 29(4): 453-464. |
| [4] | Yanagisawa S.Dof domain proteins: Plant-specific transcription factors associated with diverse phenomena unique to plants[J]. Plant and Cell Physiology, 2004, 4: 386-391. |
| [5] | Yanagisawa S.A novel DNA-binding domain that may form a single zinc finger motif[J]. Nucleic Acids Research, 1995, 23(17): 3403-3410. |
| [6] | Yanagisawa S.The DOF family of plant transcription factors[J]. Trends in Plant Science, 2003, 7(12): 555-560. |
| [7] | Baumann K, Paolis A D, Costantino P, Gualberti G.The DNA binding site of the Dof protein NtBBF1 is essential for tissue-specific and auxin-regulated expression of the rolB oncogene in plants[J]. Plant Cell, 1999, 11(3): 323-334. |
| [8] | Yamamoto M P, Onodera Y, Touno S M, Takaiwa F.Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes[J]. Plant Physiology, 2006, 141(4): 1694-1707. |
| [9] | Li D, Yang C, Li X, Gan Q, Zhao X, Zhu L.Functional characterization of rice OsDof12[J]. Planta, 2009, 229(6): 1159-1169. |
| [10] | Kim H S, Kim S J, Abbasi N, A R. Bressan, Yun D J, Yoo S S, Kwon S Y, Choi S B. The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis[J]. Plant Journal, 2010, 64(3): 524-535. |
| [11] | Chen W, Chao G, Singh K B.The promoter of a H2O2-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding sites[J]. Plant Journal, 1997, 10(6): 955-966. |
| [12] | Ward J M, Cufr C A, Denzel M A, Neff M M.The Dof transcription factor OBP3 modulates phytochrome and cryptochrome signaling in Arabidopsis[J]. Plant Cell, 2005, 17(2): 475-485. |
| [13] | Yanagisawa S, Izui K.Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif[J]. Journal of Biological Chemistry, 1993, 268(21): 16028-16036. |
| [14] | Lijavetzky D, Carbonero P, Vicente-Carbajosa J.Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families[J/OL].BMC Evolutionary Biology, 2003, 3(1): 17. |
| [15] | Moreno-Risueno M A, Martínez M, Vicente-Carbajosa J, Carbonero P. The family of DOF transcription factors: From green unicellular algae to vascular plants[J]. Molecular Genetics and Genomics, 2007, 277(4): 379-390. |
| [16] | Kushwaha H, Gupta S, Singh V, Rastogi S, Yadav D.Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis[J]. Molecular Biology Reports, 2011, 38(8): 5037-5053. |
| [17] | Chen R, Ni Z, Nie X, Qin Y, Dong G, Sun Q.Isolation and characterization of genes encoding Myb transcription factor in wheat (Triticum aestivem L.)[J]. Plant Science (Oxford), 2005, 169(6): 1146-1154. |
| [18] | Gupta S, Malviya N, Kushwaha H, Nasim J, Bisht N C, Singh V K, Yadav D.Insights into structural and functional diversity of Dof (DNA binding with one finger) transcription factor[J]. Planta, 2015, 241(3): 549-562. |
| [19] | 周淑芬, 颜静宛, 刘华清, 林智敏, 陈睿, 杨绍华, 王锋. 水稻Dof基因家族的组织表达谱及胁迫诱导表达特征分析[J]. 分子植物育种, 2012, 10(6): 635-643. |
| [19] | Zhou S F, Yan J W, Liu H Q, Lin Z M, Chen R, Yang S H, Wang F.Transcriptional profiling analysis of OsDof gene family in various rice tissues and their expression characteristics under different stresses[J]. Molecular Plant Breeding, 2012, 10(6): 635-643. (in Chinese with English abstract) |
| [20] | 纪剑辉, 周颖君, 杨雯, 谢晶, 华慧, 杨立明. 水稻Dof转录因子家族的鉴定与生物信息学分析[J]. 江苏农业学报, 2015, 31(6): 1191-1198. |
| [20] | Ji J H, Zhou Y J, Yang W, Xie J, Hua H, Yang L M.Identification and bioinformatics analysis of Dof transcription factors family in rice[J]. Jiangsu Journal of Agricultural Sciences, 2015, 31(6): 1191-1198. (in Chinese with English abstract) |
| [21] | 邓尧. 基于CRISPR/Cas9技术的水稻OsD1基因的敲除及其功能初步探究[D]. 长沙: 湖南农业大学, 2018. |
| [21] | Deng Y.Preliminary study on function of OsD1 based on CRISPR/Cas9 technology in rice[D]. Changsha: Hunan Agriculture University, 2018. (in Chinese with English abstract) |
| [22] | 赵金成, 裘烨, 陈光辉, 朱旭东. 水稻光温敏核不育系‘亮S’异交特性研究[J]. 作物研究, 2016, 30(5): 492-496. |
| [22] | Zhao J C, Qiu Y, Chen G H, Zhu X D.Studies on the outcrossing characteristics of rice photo-thermo sensitive genic male sterile line ‘Liang S’[J]. Crop Research, 2016, 30(5): 492-496. (in Chinese) |
| [23] | Li Y, Lin J, Li L, Peng Y C, Wang W W, Zhou Y B, Tang D Y, Zhao X Y, Yu F, Liu X M.DHHC- cysteine-rich domain S-acyltransferase protein family in rice: Organization, phylogenetic relationship and expression pattern during development and stress[J]. Plant Systematics and Evolution, 2016, 302(10): 1405-1417. |
| [24] | Takai T, Arai-Sanoh Y, Iwasawa N, Hayashi A, Yoshinaga S, Kondo M.Comparative mapping suggests repeated selection of the same quantitative trait locus for high leaf photosynthesis rate in rice high-yield breeding programs[J]. Crop Science, 2012, 52(6): 2649-2658. |
| [25] | Gao H, Zheng X M, Fei G, Chen J, Jin M N, Ren Y L, Wu W X, Zhou K N, Sheng P K, Zhou F, Jiang L, Wang J, Zhang X, Guo X P, Wang J L, Cheng Z J, Wu C Y, Wang H Y, Wan J M. Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice[J/OL]. PLoS Genetics, 2013, 9(2): e1003281. |
| [26] | Hori K, Ogiso-Tanaka E, Matsubara K, Yamanouchi U, Ebana K.Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response[J]. Plant Journal, 2013: 36-46. |
| [27] | Hayama R, Yokoi S, Tamaki S, Yano M, Shimamoto K.Adaptation of photoperiodic control pathways produces short-day flowering in rice[J]. Nature, 2003, 422(6933): 719-722. |
| [28] | Komiya R, Yokoi S, Shimamoto K.A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice[J]. Development, 2009, 136(20): 3443-3450. |
| [29] | Wu Q, Liu X, Yin D, Yuan H, Xie Q, Zhao X F, Li X B, Zhu L H, Li S G, Li D Y.Constitutive expression of OsDof4, encoding a C2-C2 zinc finger transcription factor, confesses its distinct flowering effects under long- and short-day photoperiods in rice (Oryza sativa L.)[J]. BMC Plant Biology, 2017, 17(1): 166. |
| [30] | Tsuji H, Tachibana C, Tamaki S, Taoka K, Kyozuka J, Shimamoto K.Hd3a promotes lateral branching in rice[J]. Plant Journal, 2015, 82(2): 256-266. |
| [31] | Dai C, Xue H W.Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signaling[J]. EMBO Journal, 2010, 29(11): 1916-1927. |
| [32] | Zhang Y, Verhoeff N I, Chen Z, Chen S, Wang M, Zhu Z, Ouwerkerk P B F. Functions of OsDof25 in regulation of OsC4PPDK[J]. Plant Molecular Biology, 2015, 89(3): 229-242. |
/
| 〈 |
|
〉 |