Orginal Article

Development of Functional Marker for Rice stripe virus Resistant Gene STV11 and Resistant Germplasm Selection in japonica Rice

Expand
  • Liaoning Province Saline and Alkaline Land Utilization and Research Institute, Panjin 124010, China
*Corresponding author, E-mail:lyskjb@126.com

Received date: 2016-03-31

  Revised date: 2016-05-17

  Online published: 2016-11-10

Abstract

The Rice stripe virus (RSV) causes one of the most serious viral diseases of rice (Oryza sativa L.). STV11 is a rice stripe virus resistant gene derived from india rice Kasalath. We developed a simple PCR-based functional marker named qstv11 which targets the functional six bp delection polymorphism at STV11KAS. The genotype on STV11 and rice stripe virus resistance of 299 varieties was analyzed, including five resistant varieties, five susceptible varieties, 41 varieties from Liaoning Province, 17 Japanese japonica varieties, 142 recombinant inbred lines (Akihikari/Qishanzhan,population A), 85 backcross recombinant inbred lines (Sasanishiki/Habataki//Sasanishiki population,B) and 4 parents. The newly developed functional marker was highly efficient in discriminating resistant genotypes from susceptible ones and showed perfect co-segregation with the trait of rice stripe virus resistance in the test varieties. One variety “Kangyan 100” was identified with STV11-R from Liaoning varieties. All the varieties from Japanese japonica varieties were susceptible to rice stripe virus. Twenty four and six varieties were identified with STV-R from population A and population B, respectively. Several varieties with STV11-R type with japonica background were detected.

Cite this article

Ting MAO, Xu LI, Zhan ZHANG, Li-dong FU, Zhen-yu LI . Development of Functional Marker for Rice stripe virus Resistant Gene STV11 and Resistant Germplasm Selection in japonica Rice[J]. Chinese Journal OF Rice Science, 2016 , 30(6) : 661 -667 . DOI: 10.16819/j.1001-7216.2016.6058

References

[1] Jiang H C, Feng Y T, Bao L, et al.Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding.Mol Breeding, 2012, 30: 1679-1688.
[2] Ni D H, Song F S, Ni J L, et al.Marker-assisted selection of two-line hybrid rice for disease to rice.Field Crops Res, 2015, 184: 1-8.
[3] Ishimaru K, Hirotsu N, Madokal Y, et al.Loss of function of the IAA-glucose hydrolase gene.Nat Genet, 2013, 45(6): 707-713.
[4] Fan C C, Xing Y Z, Mao H L, et al. GS3, a major QTL for grain length and weight and minor QTL for grain. Theor Appl Genet, 2006, 112: 1164-1171.
[5] Qu S H, Liu G F, Zhou B, et al.The broad-spectrum blast resistance gene Pi9 encodes a multigene family in rice. Genetics, 2006, 172: 1901-1914.
[6] Zhu X Y, Chen S, Yang J Y, et al.The identification of Pi50(t), a new member of the rice blast resistance Pi2/Pi9 multigene family. Theor Appl Genet, 2012, 124: 1295-1304.
[7] Andersen J R, Lubberstedt T.Functional markers in plants.Trends Plant Sci, 2002, 8(11): 554-560.
[8] Wang S K, Wu K, Yuan Q B, et al.Control of grain size, shape and quality by OsSPL16 in rice. Nat Genet, 2012, 44(8): 1-6.
[9] Ramadevi S J S, Singh K, Umakanth B, et al. Development and identification of novel rice blast resistant sources and their characterization using molecular markers.Rice Sci, 2015, 22(6): 300-308.
[10] Fjellstrom R, Conaway-Bormans C A. Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes. Crop Sci, 2004, 44: 1790-1798.
[11] Hu B, Wang W, Ou S J, et al.Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies. Nat Genet, 2015, 47: 834-838.
[12] 陈涛, 骆名瑞, 张亚东, 等. 粳稻BT型细胞质雄性不育恢复基因功能标记的开发与应用. 中国水稻科学, 2013, 27(3): 259-264.
[12] Development and application of a functional marker associated with fertility-restoring-gene for BT-type cytoplasmic male sterility (CMS) in japonica rice.Chin J Rice Sci, 2013, 27(3): 259-264. (in Chinese with English abstract)
[13] 姚姝, 陈涛, 张亚东, 等. 分子标记辅助选择聚合水稻暗胚乳突变基因Wx-mq和抗条纹叶枯病基因Stv-bi. 中国水稻科学, 2010, 24(4): 341-347.
[13] Pyramiding of translucent endosperm mutant gene wx-mq and rice stripe disease resistance gene Stv-bi by marker-assisted selection in rice (Oryza sativa). Chin J Rice Sci, 2010, 24(4): 341-347. (in Chinese with English abstract)
[14] 王才林. 江苏省水稻条纹叶枯病抗性育种研究进展. 江苏农业科学, 2006(3): 1-5.
[14] Wang C L. Advances in breeding of rice with resistance to rice stripe disease in Jiangsu, China. Jiangsu Agric Sci, 2006(3): 1-5. (in Chinese)
[15] Wang Q, Liu Y Q, He J, et al. STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus. Nat Commun, 2014, 05: 1-8.
[16] Zhang Y X, Wang Q, Jiang L, et al.Fine mapping of qSTV11KAS, a major QTL for rice stripe disease resistance. Theor Appl Genet, 2011, 122(8): 1591-1604.
[17] Sun J, Liu D, Wang J Y, et al.The contribution of intersubspecific hybridization to the breeding of super-high-yielding japonica rice in northeast China.Theor Appl Genet, 2012, 125(6): 1149-1157.
[18] 陈温福, 潘文博, 徐正进. 我国粳稻生产现状及发展趋势. 沈阳农业大学学报, 2006, 37(6): 801-805.
[18] Chen W F, Pan W B, Xu Z J.Current situation and trends in production of japonica rice in China.J Shenyang Agric Univ, 2006, 37(6): 801-805. (in Chinese with English abstract)
[19] 周彤, 周益军, 程兆榜, 等. 粳稻品种对水稻条纹叶枯病的抗性鉴定及抗病品种镇稻88的遗传分析. 植物保护学报, 2007, 34(5): 475-479.
[19] Zhou T, Zhou Y J, Cheng Z B, et al.Identification of resistance to Rice stripe virus in japonica rice varieties and analysis for its inheritance of Zhendao 88. Acta Phytophyl Sin, 2007, 34(5): 475-479. (in Chinese with English abstract)
[20] 白雪亮, 王金菊, 周维, 等. 水稻条纹叶枯病的研究进展. 生物学通报, 2007, 42(8): 4-6.
[20] Bai X L, Wang J J, Zhou W, et al.Research advance in Rice stripe virus. Bull Biol, 2007, 42(8): 4-6. (in Chinese)
[21] 毛艇, 徐海, 郭艳华, 等. 籼粳稻杂交后代群体形态分化与遗传分化的比较. 中国水稻科学, 2009, 23(3): 323-326.
[21] Mao T, Xu H, Guo Y H, et al.Comparative study on morphological differentiation and genetic differentiation in filial generation of cross between indica and japonica rice.Chin J Rice Sci, 2009, 23(3): 323-326. (in Chinese with English abstract)
[22] 李继开, 郎育农. 水稻新品种“抗盐100号”选育技术报告. 盐碱地利用, 1993(3): 4-7.
[22] Li J K, Lang Y N. Breeding technical report of rice new variety Kangyan 100. Util Sal Alk Land, 1993(3): 4-7. (in Chinese)
[23] 孙传清, 王象坤, 吉村淳, 等. 普通野生稻和亚洲栽培稻线粒体DNA的RFLP分析. 遗传学报, 1998, 25(1): 40-45.
[23] Sun C Q, Wang X K,Ji C C, et al.RFLP analysis on mitochondrial DNA in common wild rice (O. rufipogon Griff. ) and cultivated rice(O. sativa L.). Acta Genet Sin, 1998, 25(1): 40-45. (in Chinese with English abstract)
[24] 梅捍卫, 黎志康, 王一平,等. “ Lemont/特青”重组自交系的六性状籼粳分类. 中国水稻科学, 1997, 11(4): 193-197.
[24] Mei H W, Li Z K, Wang Y P, et al.Theindica/japonica classification of Lemont/Teqing recombinated inbred lines(RILs) using Cheng’s index.Chin J Rice Sci, 1997, 11(4): 193-197. (in Chinese with English abstract)
[25] 姜国勇, 祁建民, 杨仁崔, 等. 亚洲栽培稻起源与演化. 福建农林大学学报, 2002, 31(1): 5-10.
[25] Jang G Y, Qi J M, Yang R C, et al.Origin evolution and cultivation diversification of Asian cultivated rice.J Fujian Agric Forestry Univ, 2002, 31(1): 5-10. (in Chinese with English abstract)
[26] 蔡星星, 刘晶, 仇吟秋, 等. 籼稻93-11和粳稻日本晴DNA插入缺失差异片段揭示的水稻籼、粳分化.复旦学报: 自然科学版, 2006, 45(3): 309-315.
[26] Cai X X, Liu J, Qiu Y Q, et al.Differentiation of indica-japonica rice revealed by insertion/deletion fragments obtained from comparative genomic study of DNA sequences between 93-11(indica)and Nipponbare (japonica).J Fudan Univ: Nat Sci, 2006, 45(3): 309-315. (in Chinese with English abstract)
Outlines

/

Tel: 0571-63370278 E-mail: cjrs@263.net
Supported by Beijing Magtech Co., Ltd.