Research Papers

Genetic Structure and Indica/Japonica Component of Major Inbred Rice Varieties in China

Expand
  • State Key Laboratory of Rice Biology, China National Rice Research Institute,  Hangzhou  310006, China

Received date: 2010-07-12

  Revised date: 2010-09-19

  Online published: 2011-07-10

Abstract

SSR markers were used to analyze  the genetic structure and compare   indica or japonica component of Chinese major inbred rice varieties   from the 1950s to  the 1990s. The results showed that the genetic structure of major inbred rice varieties in China was distinctly divided into two populations, indica  and japonica rice. The substructure of indica rice was more complex than that of  japonica rice. Lateseason indica   rice and earlyseason japonica rice had a little simplex genetic background. The seasonal ecotypes were not quite in conformity with the subtypes of genetic structure. A total of 12 SSR loci with specific differentiation between indica and japonica rice were used to calculate the indica or japonica component. The difference of indica or japonica component among the five decades was not significant except lateseason indica rice. The japonica component of lateseason indica rice planted in the 1990s was increased obviously. These results will be helpful to understand the genetic structure of Chinese major inbred rice varieties and indicajaponica hybridization breeding in China.

Cite this article

YU Ping, YUAN Xiao-Ping, XU Qun, WANG Cai-Hong, YU Han-Yong, WANG Yi-Ping, WEI Xing-Hua* . Genetic Structure and Indica/Japonica Component of Major Inbred Rice Varieties in China[J]. Chinese Journal OF Rice Science, 2011 , 25(4) : 387 -391 . DOI: 10.3969/j.issn.1001-7216.2011.04.007

References

[1]Zhang D L, Zhang H L, Wang M X, et al. Genetic structure and differentiation of Oryza sativa L. in China revealed by microsatellites. Theor Appl Genet, 2009, 119(6): 1105-1117.
[2]丁颖. 中国栽培稻的起源及其演变. 农业学报, 1957, 8: 243-260.
[3]杨守仁. 籼粳稻杂交育种研究. 作物学报, 1962, 1(2): 97-102.
[4]杨守仁. 籼粳稻杂交育种研究. 遗传学通讯, 1973, 2: 34-38.
[5]朱立宏. 籼粳稻杂交育种研究. 作物学报, 1964, 3(1): 69-84.
[6]曾世雄, 杨秀青, 卢庄文. 栽培稻籼粳亚种间杂种一代优势的研究. 作物学报, 1980, 6(4): 193-202.
[7]林世成, 闵绍楷. 中国水稻品种及其系谱. 上海: 上海科学技术出版社, 1991: 70-138.
[8]魏兴华, 汤圣祥, 江云珠, 等. 中国栽培稻选育品种等位酶多样性及其与形态学性状的相关分析. 中国水稻科学, 2003, 17(2): 123-128.
[9]齐永文, 张冬玲, 张洪亮, 等. 中国水稻选育品种遗传多样性及其近50年变化趋势.科学通报, 2006, 51(6): 693-699.
[10]华蕾, 袁筱萍, 余汉勇, 等. 我国水稻主栽品种SSR多样性的比较分析. 中国水稻科学, 2007, 21(2): 150-154.
[11]魏兴华, 袁筱萍, 余汉勇, 等. 我国常规稻主栽品种的遗传变异分析. 中国水稻科学, 2009, 23(3): 237-244.
[12] Wei X H, Yuan X P, Yu H Y, et al. Temporal changes in SSR allelic diversity of major rice cultivars in China. J Genet Genom, 2009, 36: 363-370.
[13] Zheng K L, Subudhi P K, Domingo J, et al. Rapid DNA isolation for marker assisted selection in rice breeding. Rice Genet Newsl, 1995, 12: 255-258.
[14]Panaud O, Chen X, McCouch S R. Development of a microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (O. sativa L.). Mol Gen Genet, 1996, 252: 597-607.
[15] Liu K, Muse S V. Integrated analysis environment for genetic marker data. Bioinformatics, 2005, 21: 2128-2129.
[16]Excoffier L, Laval G, Schneider S. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online, 2005, 1: 47-50.
[17]Falush D, Stephens M, Pritchard J K. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics, 2003, 164: 1567-1587.
Outlines

/

Tel: 0571-63370278 E-mail: cjrs@263.net
Supported by Beijing Magtech Co., Ltd.