研究报告

水稻OsDR8基因的稻瘟病抗性评价及优异单倍型鉴定

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  • 1青岛农业大学,山东 青岛 266000
    2福建省农业科学院 生物技术研究所/福建省农业遗传工程重点实验室,福州 350003
    3中国农业科学院(深圳)农业基因组研究所,广东 深圳 518120
    4中国水稻研究所 水稻生物育种国家重点实验室,杭州 311401
    5中农常乐(深圳)生物育种技术有限公司,广东 深圳 518420

收稿日期: 2024-05-16

  修回日期: 2024-07-19

  网络出版日期: 2025-05-21

基金资助

国家重点研发计划资助项目(2022YFE0139400);深圳市科技计划资助项目(GJHZ20190821163601707);福建省农业高质量发展超越“5511”协同创新工程项目(XTCXGC2021002)

Evaluation of Blast Resistance and Identification of Superior Haplotype of OsDR8 in Rice

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  • 1Qingdao Agricultural University, Qingdao 266000, China
    2Institute of Biotechnology, Fujian Academy of Agricultural Sciences/Fujian Provincial Key Laboratory of Genetic Engineering for Agriculture, Fuzhou 350003, China
    3Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
    4State Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 311401, China
    5CAAS Channel (Shenzhen) Biological Breeding Technology Co., Ltd., Shenzhen 518120, China

Received date: 2024-05-16

  Revised date: 2024-07-19

  Online published: 2025-05-21

摘要

【目的】水稻(Oryza sativa L.)是全球重要的主粮作物,其生产安全受到稻瘟病的严重威胁。抗稻瘟病材料的鉴定及相关抗稻瘟病基因的解析,有助于揭示稻瘟病抗性机制。本研究旨在系统创制和鉴定水稻抗稻瘟病基因OsDR8的遗传材料,并对其进行单倍型和进化分析,以期筛选优异单倍型,探究其亚群分化,为OsDR8基因的抗病育种应用提供理论依据。【方法】创制了OsDR8基因的过表达株系和敲除株系,并用RO1-1和RB22稻瘟菌对过表达株系、纯合敲除株系和对应野生型材料进行稻瘟病抗性鉴定。同时,基于水稻超级泛基因组变异图谱,进行OsDR8基因的单倍型分析和进化分析。【结果】对这些材料进行症状观察和稻瘟病抗性鉴定,发现相比野生型株系,敲除突变体株系病斑显著增大,发病叶面积占比也显著上升;而过表达株系病斑显著减小,发病叶面积占比也显著降低。结合单倍型及进化分析,说明携带优异单倍型Hap2的材料抗病性较强,籼稻亚群中95.52%材料为Hap2单倍型。【结论】OsDR8基因正调控水稻稻瘟病抗性,优异单倍型Hap2可能与籼稻稻瘟病抗性较强有关。

本文引用格式

张彬涛, 刘聪聪, 郭明亮, 杨绍华, 吴世强, 郭龙彪, 朱义旺 . 水稻OsDR8基因的稻瘟病抗性评价及优异单倍型鉴定[J]. 中国水稻科学, 2025 , 39(3) : 343 -351 . DOI: 10.16819/j.1001-7216.2025.240509

Abstract

【Objective】Rice (Oryza sativa L.) is a crucial staple crop globally. Its production is severely threatened by rice blast disease. Identifying resistance materials and analyzing resistance genes are essential for understanding the mechanisms behind rice blast resistance. This study aims to systematically generate and identify genetic materials of the rice blast resistance gene OsDR8, conduct haplotype and evolutionary analyses to select superior haplotypes, and investigate their subpopulation differentiation. These efforts will lay a theoretical basis for the application of OsDR8 in rice blast resistance breeding programs.【Method】We developed transgenic lines overexpressing the OsDR8 gene and its knockout mutants. We conducted rice blast resistance assays on the overexpression lines, homozygous knockout lines, and corresponding wild-type materials using Magnaporthe oryzae isolates RO1-1 and RB22. Meanwhile, haplotype and evolutionary analyses of the OsDR8 gene were conducted based on the rice super pan-genome variation map.【Result】Disease symptom observation and disease resistance evaluation indicated that knockout mutants had significantly larger lesion sizes and a higher proportion of diseased leaf area compared to the wild-type. In contrast, the overexpression lines showed reduced lesion sizes and a lower proportion of diseased leaf area. Combined with haplotype and evolutionary analyses, the results indicated that materials of the superior haplotype Hap2 show stronger disease resistance, with 95.52% of the indica rice subpopulation being the Hap2 haplotype.【Conclusion】The OsDR8 gene positively regulates resistance to rice blast, and that the superior haplotype Hap2 may be associated with stronger resistance in indica rice.

参考文献

[1] Skamnioti P, Gurr S J. Against the grain: Safeguarding rice from rice blast disease[J]. Trends in Biotechnology, 2009, 27(3): 141-150.
[2] Jones J D G, Dangl J L. The plant immune system[J]. Nature, 2006, 444(7117): 323-329.
[3] Zhou J M, Zhang Y. Plant immunity: Danger perception and signaling[J]. Cell, 2020, 181(5): 978-989.
[4] Yuan M, Jiang Z, Bi G, Nomura K, Liu M, Wang Y, Cai B, Zhou J M, He S Y, Xin X F. Pattern-recognition receptors are required for NLR-mediated plant immunity[J]. Nature, 2021, 592(7852): 105-109.
[5] Ngou B P M, Ahn H K, Ding P, Jones J D G. Mutual potentiation of plant immunity by cell-surface and intracellular receptors[J]. Nature, 2021, 592(7852): 110-115.
[6] Wang J, Song W, Chai J. Structure, biochemical function, and signaling mechanism of plant NLRs[J]. Molecular Plant, 2023, 16(1): 75-95.
[7] Ding L N, Li Y T, Wu Y Z, Li T, Geng R, Cao J, Zhang W, Tan X L. Plant disease resistance-related signaling pathways: Recent progress and future prospects[J]. International Journal of Molecular Sciences, 2022, 23(24): 16200.
[8] Dong W, Stockwell V O, Goyer A. Enhancement of thiamin content in Arabidopsis thaliana by metabolic engineering[J]. Plant and Cell Physiology, 2015, 56(12): 2285-2296.
[9] Boubakri H, Gargouri M, Mliki A, Brini F, Chong J, Jbara M J P. Vitamins for enhancing plant resistance[J]. Planta, 2016, 244(3): 529-543.
[10] Rapala-Kozik M, Wolak N, Kujda M, Banas A K. The upregulation of thiamine (vitamin B1) biosynthesis in Arabidopsis thaliana seedlings under salt and osmotic stress conditions is mediated by abscisic acid at the early stages of this stress response[J]. BMC Plant Biology, 2012, 12(1): 2.
[11] Ahn I P, Kim S, Lee Y H. Vitamin B1 functions as an activator of plant disease resistance[J]. Plant Physiology, 2005, 138(3): 1505-1515.
[12] Ahn I P, Kim S, Lee Y H, Suh S C. Vitamin B1-induced priming is dependent on hydrogen peroxide and the NPR1 gene in Arabidopsis[J]. Plant Physiology, 2007, 143(2): 838-848.
[13] Bahuguna R N, Joshi R, Shukla A, Pandey M, Kumar J. Thiamine primed defense provides reliable alternative to systemic fungicide carbendazim against sheath blight disease in rice (Oryza sativa L.)[J]. Plant Physiology and Biochemistry, 2012, 57: 159-167.
[14] Wang G, Ding X, Yuan M, Qiu D, Li X, Xu C, Wang S. Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation[J]. Plant Molecular Biology, 2006, 60(3): 437-449.
[15] Xie X, Ma X, Zhu Q, Zeng D, Li G, Liu Y G. CRISPR-GE: A convenient software toolkit for CRISPR-based genome editing[J]. Molecular Plant, 2017, 10(9): 1246-1249.
[16] Shang L, He W, Wang T, Yang Y, Xu Q, Zhao X, Yang L, Zhang H, Li X, Lü Y, Chen W, Cao S, Wang X, Zhang B, Liu X, Yu X, He H, Wei H, Leng Y, Shi C, Guo M, Zhang Z, Zhang B, Yuan Q, Qian H, Cao X, Cui Y, Zhang Q, Dai X, Liu C, Guo L, Zhou Y, Zheng X, Ruan J, Cheng Z, Pan W, Qian Q. A complete assembly of the rice Nipponbare reference genome[J]. Molecular Plant, 2023, 16(8): 1232-1236.
[17] Shang L, Li X, He H, Yuan Q, Song Y, Wei Z, Lin H, Hu M, Zhao F, Zhang C, Li Y, Gao H, Wang T, Liu X, Zhang H, Zhang Y, Cao S, Yu X, Zhang B, Zhang Y, Tan Y, Qin M, Ai C, Yang Y, Zhang B, Hu Z, Wang H, Lü Y, Wang Y, Ma J, Wang Q, Lu H, Wu Z, Liu S, Sun Z, Zhang H, Guo L, Li Z, Zhou Y, Li J, Zhu Z, Xiong G, Ruan J, Qian Q. A super pan-genomic landscape of rice[J]. Cell Research, 2022, 32(10): 878-896.
[18] Cingolani P, Platts A, Wang L L, Coon M, Nguyen T, Wang L, Land S J, Lu X, Ruden D M. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila Melanogaster strain w1118; iso-2; iso-3[J]. Fly, 2012, 6(2): 80-92.
[19] Hothorn T, Bretz F, Westfall P. Simultaneous inference in general parametric models[J]. Biometrical Journal, 2008, 50(3): 346-363.
[20] Paradis E. PEGAS: An R package for population genetics with an integrated-modular approach[J]. Bioinformatics, 2010, 26(3): 419-420.
[21] Leigh J W, Bryant D. PopART: Full-feature software for haplotype network construction[J]. Methods in Ecology and Evolution, 2015, 6(9): 1110-1116.
[22] Katoh K, Standley D M. MAFFT multiple sequence alignment software version 7: Improvements in performance and usability[J]. Molecular Biology and Evolution, 2013, 30(4): 772-780.
[23] Tamura K, Stecher G, Kumar S. MEGA11: Molecular evolutionary genetics analysis version 11[J]. Molecular Biology and Evolution, 2021, 38(7): 3022-3027.
[24] Ogata Y, Kimura N, Sano R. Gcorn plant: A database for retrieving functional and evolutionary traits of plant genes[J]. Plant Physiology, 2019, 180(2): 732-742.
[25] Chow C N, Lee T Y, Hung Y C, Li G Z, Tseng K C, Liu Y H, Kuo P L, Zheng H Q, Chang W C. PlantPAN3.0: A new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants[J]. Nucleic Acids Research, 2019, 47(D1): D1115-D1163.
[26] Liu M H, Kang H, Xu Y, Peng Y, Wang D, Gao L, Wang X, Ning Y, Wu J, Liu W, Li C, Liu B, Wang G L. Genome-wide association study identifies an NLR gene that confers partial resistance to Magnaporthe oryzae in rice[J]. Plant Biotechnology Journal, 2020, 18(6): 1376-1383.
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