
利用CRISPR/Cas9敲除OsNramp5基因创制低镉籼稻
收稿日期: 2019-03-05
修回日期: 2019-05-24
网络出版日期: 2019-09-10
基金资助
国家重点研发计划资助项目(2016YFD0102102);江西现代农业科研协同创新专项(JXXTCX2015001-003);江西省科技计划项目农业领域重点项目(20141BBF60001)
Creation of Low-Cd-accumulating indica Rice by Disruption of OsNramp5 Gene via CRISPR/Cas9
Received date: 2019-03-05
Revised date: 2019-05-24
Online published: 2019-09-10
【目的】 为了尝试快速培育低镉籼稻,【方法】 选取广泛应用的杂交水稻亲本华占和五丰B以及常规品种五山丝苗和中早35为材料,通过CRISPR/Cas9技术创制OsNramp5基因突变株系,在镉污染及正常土壤中种植并测定突变株系籽粒(糙米)镉含量,其他相关元素含量亦同时在镉污染土壤种植条件下测定,在非镉污染土壤种植条件下考查OsNramp5基因敲除对农艺性状的影响。【结果】 成功获得了前述品种的OsNramp5基因敲除株系;非镉污染条件下种植的4个品种OsNramp5基因敲除株系籽粒镉含量低于0.02 mg/kg,平均较野生型降低85.5%;而在镉污染土壤种植时,不同品种OsNramp5基因敲除株系籽粒镉含量低于0.1 mg/kg,平均比野生型降低94.8%;锰含量也降低52.7%,铬含量增加59.5%,铅含量在华占中增加79.1%,而在其他品种中无变化;铜、铁、锌、钙、硒和砷含量(后4种元素只在华占及衍生品系中检测)受影响较小或不受影响;OsNramp5基因敲除株系株高、结实率和千粒重较野生型小幅降低,而有效分蘖略微增加,产量平均减少6.9%。【结论】 通过OsNramp5基因敲除,可以显著降低镉积累,但在某些种植条件下,代价为小幅产量损失;通过本研究获得的低镉OsNramp5基因敲除品系在镉污染地区具有较好利用潜力。
龙起樟, 黄永兰, 唐秀英, 王会民, 芦明, 袁林峰, 万建林 . 利用CRISPR/Cas9敲除OsNramp5基因创制低镉籼稻[J]. 中国水稻科学, 2019 , 33(5) : 407 -420 . DOI: 10.16819/j.1001-7216.2019.9026
【Objective】 To accelerate the breeding process of low-Cd-accumulating rice,【Methods】 the widely applied indica pure-line cultivars, Wushansimiao and Zhongzao 35, and the popular parents of hybrids, Huazhan and Wufeng B were used as materials to create OsNramp5 knockout lines via CRISPR/Cas9. The marker-free OsNramp5 mutants together with the wild types were grown either in a Cd-contaminated field (Field A) or in a non-Cd-contaminated field (Field B) for subsequent experiments. The changes of the grain Cd content were investigated for plants grown in both Field A and Field B. The changes of the contents of other related minerals were also examined but only for those plants grown in Field A. The agronomic changes of the mutants were further assessed by examining those plants grown in Field B. 【Results】 Rice lines with mutations at OsNramp5 were successfully generated for all the four cultivars. On one hand, the grain Cd level in OsNramp5 mutants grown in Field B was reduced by 85.5% on average (<0.02 mg/kg); as a result of OsNramp5 mutation, the Cd level in plants grown in Field A, was reduced by 94.8% (<0.1 mg/kg), meanwhile, the Mn level was decreased by 52.7%; on the contrary, the Cr level was elevated by 59.5% on average for the four cultivars and an increase of 79.1% in the Pb level was also observed but only in OsNramp5 mutants of Huazhan; the levels of other mineral elements including Fe, Cu , Zn, Ca, Se and As were slightly or hardly affected. On the other hand, a slight decrease in plant height and an average yield loss of 6.9% were observed due to OsNramp5 mutation for all cultivars; the yield loss could be ascribed to a reduction in seed setting rate and seed weight and was compensated by a slight increase in effective tiller number. 【Conclusion】 Low-Cd-accumulating rice plants can be generated by OsNramp5 disruption at the cost of an acceptable yield loss and the low-Cd-accumulating rice lines produced in the present study may serve as promising cultivars to eliminate rice Cd contamination in many areas.
Key words: indica rice; cadmium; genetic editing; breeding
| [1] | Grant C A, Clarke J M, Duguid S, Chaney R L.Selection and breeding of plant cultivars to minimize cadmium accumulation.Sci Total Environ, 2008, 390: 301-310. |
| [2] | Sebastian A, Prasad M N V. Cadmium minimization in rice. A review.Agron Sustain Dev, 2014, 34(1): 155-173. |
| [3] | Järup L, Åkesson A.Current status of cadmium as an environmental health problem.Toxicol Appl Pharmacol , 2009, 238: 201-208. |
| [4] | Arao T, Ae N.Genotypic variations in cadmium levels of rice grain.Soil Sci Plant Nutr, 2003, 49(4): 473-479 |
| [5] | Liu J, Zhu Q, Zhang Z, Xu J, Yang J, Wong M H.Variations in cadmium accumulation among rice cultivars and types and the selection of cultivars for reducing cadmium in the diet.J Sci Food Agric, 2005, 85: 147-153. |
| [6] | 王林友, 竺朝娜, 王建军, 张礼霞, 金庆生, 石春海. 水稻镉、铅、砷低含量基因型的筛选. 浙江农业学报, 2012, 24(1): 133-138. |
| [6] | Wang L Y, Zhu C N, Wang J J, Zhang L X, Jin Q S, Shi C H.Screening for rice (Oryza sativa L.) genotyeps with lower Cd, Pb and As contents. Acta Agric Zhejiang, 2012, 24(1): 133-138. (in Chinese with English abstract) |
| [7] | 叶新新, 周艳丽, 孙波. 适于轻度Cd、As污染土壤种植的水稻品种筛选. 农业环境科学学报, 2012, 31(6): 1082-1088. |
| [7] | Ye X X, Zhou Y L, Sun B.Screening of suitable rice cultivars for the adaptation to lightly contaminated soil with Cd and As.J Agro-Environ Sci, 2012, 31(6): 1082-1088. (in Chinese with English abstract) |
| [8] | Uraguchi S, Fujiwara T.Rice breaks ground for cadmium-free cereals.Curr Opin Plant Biol, 2013, 16(3): 328-334. |
| [9] | Uraguchi S, Fujiwara T.Cadmium transport and tolerance in rice: Perspectives for reducing grain cadmium accumulation.Rice, 2012, 5(1): 5. |
| [10] | Satoh-Nagasawa N, Mori M, Nakazawa N, Kawamoto T, Nagato Y, Sakurai K, Takahashi H, Watanabe A, Akagi H.Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium. Plant Cell Physiol, 2012, 53(1): 213-224. |
| [11] | Takahashi R, Ishimaru Y, Shimo H, Ogo Y, Senoura T, Nishizawa N K, Nakanishi H.The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice.Plant Cell Environ, 2012, 35(11): 1948-1957. |
| [12] | Yamaji N, Xia J, Mitani-Ueno N, Yokosho K, Feng M J.Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2.Plant Physiol, 2013, 162(2): 927-939. |
| [13] | Ueno D, Yamaji N, Kono I, Huang C F, Ando T, Yano M, Ma J F.Gene limiting cadmium accumulation in rice.Proc Natl Acad Sci USA, 2010, 107(38): 16 500-16 505. |
| [14] | Uraguchi S, Kamiya T, Sakamoto T, Kasai K, Sato Y, Nagamura Y, Yoshida A, Kyozuka J, Ishikawa S, Fujiwara T.Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains.Proc Natl Acad Sci USA, 2011, 108(52): 20 959-20 964. |
| [15] | Shimo H, Ishimaru Y, An G, Yamakawa T, Nakanishi H, Nishizawa N K.Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice. J Exp Bot, 2011, 62(15): 5727-5734. |
| [16] | Ishikawa S, Ishimaru Y, Igura M, Kuramata M, Abe T, Senoura T, Hase Y, Arao T, Nishizawa N K, Nakanishi H.Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice.Proc Natl Acad Sci USA, 2012, 109(47): 19 166-19 171. |
| [17] | Ishimaru Y, Takahashi R, Bashir K, Shimo H, Senoura T, Sugimoto K, Ono K, Yano M, Ishikawa S, Arao T, Nakanishi H, Nishizawa N K.Characterizing the role of rice NRAMP5 in manganese, iron and cadmium transport.Sci Rep, 2012, 2: 286. |
| [18] | Sasaki A, Yamaji N, Yokosho K, Ma J F.Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice.Plant Cell, 2012, 24(5): 2155-2167. |
| [19] | Belhaj K, Chaparro-Garcia A, Kamoun S, Nekrasov V.Plant genome editing made easy: Targeted mutagenesis in model and crop plants using the CRISPR/Cas system.Plant Methods, 2013, 9(1): 39. |
| [20] | Peng H, Zhang Q, Li Y, Lei C, Zhai Y, Sun X, Sun D, Sun Y, Lu T.A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance.Planta, 2009, 230(2): 377-385. |
| [21] | Miao J, Guo D, Zhang J, Huang Q, Qin G, Zhang X, Wan J, Gu H, Qu L J.Targeted mutagenesis in rice using CRISPR-Cas system.Cell Res, 2013, 23(10): 1233-1236. |
| [22] | Feng Z, Zhang B, Ding W, Liu X, Yang D L, Wei P, Cao F, Zhu S, Zhang F, Mao Y, Zhu J K.Efficient genome editing in plants using a CRISPR/Cas system.Cell Res, 2013, 23(10): 1229-1232. |
| [23] | Cong L, Ran F A, Cox D, Lin S, Barretto R, Habib N, Hsu P D, Wu X, Jiang W, Marraffini L A, Zhang F.Multiplex genome engineering using CRISPR/Cas systems.Science, 2013, 339(6121): 819-823. |
| [24] | Liu H, Ding Y, Zhou Y, Jin W, Xie K, Chen L L.CRISPR-P 2.0: An improved CRISPR-Cas9 tool for genome editing in plants.Mol Plant, 2017, 10(3): 530-532. |
| [25] | Lei Y, Lu L, Liu H Y, Li S, Xing F, Chen L L.CRISPR-P: A web tool for synthetic single-guide RNA design of CRISPR-system in plants.Mol Plant, 2014, 7(9): 1494-1496. |
| [26] | Holsters M, de Waele D, Depicker A, Messens E, van Montagu M, Schell J. Transfection and transformation ofAgrobacterium tumefaciens. Mol Gen Genet, 1978, 163(2): 181-187. |
| [27] | Toki S, Hara N, Ono K, Onodera H, Tagiri A, Oka S, Tanaka H.Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of rice.Plant J, 2006, 47(6): 969-976. |
| [28] | Allen G C, Flores-Vergara M A, Krasynanski S, Kumar S, Thompson W F. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethy- lammonium bromide.Nat Protoc, 2006, 1(5): 2320-2325. |
| [29] | 刘巧泉, 陈秀花, 王兴稳, 彭凌涛, 顾铭洪. 一种快速检测转基因水稻中潮霉素抗性的简易方法. 农业生物技术学报, 2001, 9(3): 264-268. |
| [29] | Liu Q Q, Chen X H, Wang X Y, Peng T L, Gu M H.A rapid simple method of assaying hygromysin resistance in transgenic rice. J Agric Biotechnol, 2001, 9(3): 264-268. (in Chinese with English abstract) |
| [30] | Tang L, Mao B, Li Y, Lv Q, Zhang L, Chen C, He H, Wang W, Zeng X, Shao Y, Pan Y, Hu Y, Peng Y, Fu X, Li H, Xia S, Zhao B.Knockout ofOsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield. Sci Rep, 2017, 7(1): 14 438. |
| [31] | Rizwan M, Ali S, Adrees M, Rizvi H, Zia-Ur-Rehman M, Hannan F, Qayyum M F, Hafeez F, Ok Y S.Cadmium stress in rice: Toxic effects, tolerance mechanisms, and management: A critical review.Environ Sci Pollut Res Int, 2016, 23(18): 17 859-17 879. |
| [32] | 吴平. 应用RFLP标记分析水稻株高与分蘖的遗传相关性. 中国科学C辑: 生命科学, 1996, 26(3): 264-270. |
| [32] | Wu P.Genetic correlation analysis of rice plant height and tiller number using RFLP markers.Sci China: Ser C, 1996, 26(3): 264-270. (in Chinese; the title was translated into English by us) |
| [33] | Allen F, Crepaldi L, Alsinet C, Strong A J, Kleshchevnikov V, De Angeli P, Páleníková P, Khodak A, Kiselev V, Kosicki M, Bassett A R, Harding H, Galanty Y, Muñoz-Martínez F, Metzakopian E, Jackson S P, Parts L.Predicting the mutations generated by repair of Cas9-induced double-strand breaks.Nat Biotechnol, 2018, 37: 64-72. |
| [34] | Wang C, Guo W, Ye S, Wei P, Ow D W.Reduction of Cd in rice through expression ofOXS3-like gene fragments. Mol Plant, 2016, 9(2): 301-304 |
| [35] | Uraguchi S, Kamiya T, Clemens S, Fujiwara T.Characterization of OsLCT1, a cadmium transporter from indica rice (Oryza sativa). Physiol Plant, 2014, 151(3): 339-347. |
| [36] | Hao X, Zeng M, Wang J, Zeng Z, Dai J, Xie Z, Yang Y, Tian L, Chen L, Li D.A node-expressed transporter OsCCX2 is involved in grain cadmium accumulation of rice.Front Plant Sci, 2018, 9: 476. |
/
| 〈 |
|
〉 |