Grain weight is one of the most important factors in grain yield and grain quality. TGW6 was reported to significantly enhance thousandgrain weight without negative effect on grain quality. To improve the selection efficiency of grain weight gene TGW6 in breeding, the marker CAPs61 based on the single nucleotide deletion in the functional region of alleles TGW6/tgw6 was selected and furtherly confirmed to be a gene based marker via sequencing CAPs61 PCR products. CAPs61 was employed to genotype 43 indica rice varieties, 65 japonica varieties certificated in Jiangsu Province from 2007 to 2013, and 179 local japonica cultivars from Taihu Basin. The results showed that there were only 14 indica varieties carrying TGW6 gene, while TGW6 gene was not detected in 244 japonica rice samples, indicating that TGW6 mainly exists in indica germplasm, and is rarely found in japonica rice varieties.
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