Research Papers

Development of Specific DNA Markers for Detecting the Rice Blast Resistance Gene Alleles Pi2/9/zt

Expand
  • 1 The Plant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China; 2Guangdong Provincial Key Laboratory of High Technology for Plant Protection, Guangzhou 510640, China

Received date: 2014-05-21

  Revised date: 2014-07-15

  Online published: 2015-05-10

Abstract

Specific molecular markers for detecting the alleles of Pi2/Pi9/Pizt, designated as Pi2SNP, Pi9SNP and PiztPA, respectively, have been successfully developed through sequence comparison method. These three specific markers can distinctly distinguish target genes from others mapped on Pi2/9 locus, which facilitate the molecular markerassistant selection and the development of pyramiding cultivars combined with other allele R genes. Additionally, 101 main cultivars and breeding parents collected from different riceplanting areas have been diagnosed with these three specific markers, and the results showed that only 2 out of 101 cultivars carried Pizt, but neither Pi2 nor Pi9 band had been detected. So far, it indicated that most of the main cultivars and breeding parents in China do not carry  Pi2/Pi9/Pizt. These results had provided important information for the application of Pi2/Pi9/Pizt in the blast resistance breeding programs.

Cite this article

HUA Lixia1,2,#, WANG Wenjuan1,2,# , CHEN Shen1,2, WANG Congying1,2, ZENG Liexian1,YANG Jianyuan1, ZHU Xiaoyuan1, SU Jing1,2,* . Development of Specific DNA Markers for Detecting the Rice Blast Resistance Gene Alleles Pi2/9/zt[J]. Chinese Journal OF Rice Science, 2015 , 29(3) : 305 -310 . DOI: 10.3969/j.issn.1001-7216.2015.03.010

References

\[1\]Liu J, Wang X, Mitchell T, et al. Recent progress and understanding of the molecular mechanisms of the riceMagnaporthe oryzae interaction. Mol Plant Pathol, 2010, 11(3): 419427.

\[2\]Kiyosawa S. Breakdown of blast resistance in rice in relation to general strategies of resistance gene deployment to prolong effectiveness of disease resistance in plants//Leonard K J, Fry W E. Plant Disease Epidemiology. New York:McGrawHill, 1989: 251283.

\[3\]殷得所, 夏明元, 李进波, 等. 抗稻瘟病基因Pi9的STS连锁标记开发及在分子标记辅助育种中的应用. 中国水稻科学, 2011, 25(1): 2530.

\[4\]柳武革, 王丰, 金素娟, 等.利用分子标记辅助选择聚合Pi1和Pi2基因改良两系不育系稻瘟病抗性.作物学报, 2008, 34 (7): 11281136.

\[5\]Hittalmani S, Parco A, Mew T V, et al. Fine mapping and DNA markerassisted pyramiding of the three major genes for blast resistance in rice. Theor Appl Genet, 2000, 100(7): 11211128.

\[6\]Jena K K, Mackill D J. Molecular markers and their use in markerassisted selection in rice. Crop Sci, 2008, 48(4): 12661276.

\[7\]Fu C, Wu T, Liu W, et al. Genetic improvement of resistance to blast and bacterial blight of the elite maintainer line Rongfeng B in hybrid rice (Oryza sativa L.) by using markerassisted selection. Afric J Biotechnol, 2012, 11 (67): 1310413124.

\[8\]Hayashi K, Yoshida H, Ashikawa I. Development of PCRbased allelespecific and InDel marker sets for nine rice blast resistance genes. Theor Appl Genet, 2006, 113 (2): 251260.

\[9\]Ingvardsen C R, Schejbel B, Lübberstedt T. Functional markers in resistance breeding. Prog Bot, 2008, 69: part 2, 6187.

\[10\]Zhou B, Qu S, Liu G, et al. The eight aminoacid differences within three leucinerich repeats between Pi2 and Pizt resistance proteins determine the resistance specificity to Magnaporthe grisea. Mol Plant Microb Interact, 2006, 19(11): 12161228.

\[11\]Ashikawa I, Hayashi N, Yamane H, et al. Two adjacent nucleotidebinding siteleucine rich repeat class genes are required to confer Pikmspecific rice blast resistance. Genetics, 2008, 180(4): 22672276.

\[12\]Yuan B,Zhai C, Wang W, et al. The Pikp resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CCNBSLRR genes. Theor Appl Genet 2011, 122(5): 10171028.

\[13\]Zhai C, Lin F, Dong Z, et al.The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication. New Phytol, 2011, 189(1): 321334.

\[14\]Hua L, Wu J, Chen C, et al. The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast. Theor Appl Genet, 2012, 125(5): 10471055.

\[15\]Jiang N, Li Z, Wu J, et al. Molecular mapping of the  Pi2/9 allelic gene Pi22 conferring broadspectrum resistance to Magnaporthe oryzae in the rice cultivar Jefferson. Rice, 2012, 5: 29.

\[16\]Qu S, Liu G, Zhou B, et al. The broadspectrum blast resistance gene Pi9 encodes a nucleotidebinding siteleucinerich repeat protein and is a member of a multigene family in rice. Genetics, 2006, 172 (3): 19011914.

\[17\]Neff MM, Turk E, Kalishman M. Webbased primer design for single nucleotide polymorphism analysis. Trends Genet, 2002, 18(12): 613615.

\[18\]Koide Y, Kobayashi N, Xu D, et al. Resistance genes and selection DNA markers for blast disease in rice (Oryza sativa L.). JARQ, 2009, 43(4): 255280.

\[19\]Wen S, Gao B.Introgressing blast resistant gene Pi9 (t) into elite rice restorer Luhui 17 by markerassisted selection. Rice Genom Genet, 2011, 2(4): 3136.

\[20\]Jiang H, Feng Y,Bao L, et al. Improve blast resistance of Jin 23B and its hybrid rice by markerassisted gene pyramiding. Mol Breeding, 2012, 30 (4): 16791688.

\[21\]Lei C,Hao K, Yang Y, et al. Identification and fine mapping of two blast resistance genes in rice cultivars 9311. Crop J, 2013, 1(1): 214.

\[22\]Takagi H,Uemura A, Yaegashi H, et al. MutMapGap: Wholegenome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii. New Phytol, 2013, 200(1): 276283.

\[23\]Hayashi K, Yasuda N, Fujita Y, et al. Identification of the blast resistance genePit in rice cultivars using functional markers. Theor Appl Genet, 2010, 121(7): 13571367.

\[24\]Wang H M, Chen J, Shi Y F, et al. Development and validation of CAPS markers for markerassisted selection of rice blast resistance gene Pi25. Acta Agron Sin, 2012, 38(11):19601968.

\[25\]Huang B, Xu J Y,Hou M S, et al. Introgression of bacterial blight resistance genes Xa7, Xa21, Xa22 and Xa23 into hybrid rice restorer lines by molecular markerassisted selection. Euphytica, 2012, 187(3): 449459.

\[26\]Chen J, Shi Y, Liu W, et al. A Pid3 allele from rice cultivar Gumei 2 confers resistance to Magnaporthe oryzae. J Gen Genom, 2011, 38(5): 209216.

\[27\]Zhu X, Chen S, Yang J, et al. The identification of Pi50 (t), a new member of the rice blast resistance Pi2/9  multigene family. Theor Appl Genet, 2012, 124(7): 12951304.
Outlines

/

Tel: 0571-63370278 E-mail: cjrs@263.net
Supported by Beijing Magtech Co., Ltd.