Chinese Journal OF Rice Science >
Genetic Diversity and Population Structure Analysis of Currently Cultivated Rice Landraces from Hani’s Terraced Fields in Yunnan Province
Received date: 2014-06-07
Revised date: 2014-09-17
Online published: 2015-01-10
In order to provide useful information for protection and utilization of rice landraces from Hani’s Terraced Fields, the genetic diversity and population structure of the currently cultivated lines were determined by using molecular makers. In this study, 118 SSR markers were used to detect the polymorphism of 47 local rice materials, and their genetic diversity and population structure were analyzed. There were a total of 255 alleles, ranging from 2 to 4 per locus, with the mean of 2.161. Genetic diversity index varied from 0.043 to 0.656 with an average of 0.303. The polymorphic information content (PIC) ranged from 0.042 to 0.583 with the average of 0.256. There are two highly polymorphic loci (PIC> 0.5) and 66 moderately polymorphic loci (0.25 <PIC <0.5). All the landraces could be divided into two groups, partial indica group and partial japonica group, based on the genetic similarity coefficient and mathematical model of population structure. There was no obvious regularity between clustering results and altitude, but partial indica red rice group had two clusters coming from different altitudes. In conclusion, currently cultivated rice in Hani’s Terraced Fields had a majority of landraces belonging to indica type, and lower genetic diversity than that in previous reports.
Cheng-chen LIU, Fu-wei ZHAO, Xiao-xia WU, Chang-quan ZHANG, Kong-zhi ZHU, Da-yuan XUE, Jian-yong WU, Shao-wen HUANG, Xiao-ying XU, Yin-gen JIN, Qiao-quan LIU . Genetic Diversity and Population Structure Analysis of Currently Cultivated Rice Landraces from Hani’s Terraced Fields in Yunnan Province[J]. Chinese Journal OF Rice Science, 2015 , 29(1) : 28 -34 . DOI: 10.3969/j.issn.1001-7216.2015.01.004
| [1] | 王凤梅. 世界稻种资源以及我国引种利用概况. 安徽农业科学, 2009, 37(25): 11909-11911. |
| [2] | Zeng Y W, Shen S Q, Li Z C, et al . Ecogeographic and genetic diversity based on morphological characters of indigenous rice(Oryza sativa L.) in Yunnan, China.Gen Res Crop Evol, 2003, 50(6): 567-577. |
| [3] | Zeng Y W, Zhang H L, Li Z C, et al . Evolution of genetic diversity of rice landraces (Oryza sativa L.) in Yunnan, China.Breeding Sci, 2007, 57: 91-99. |
| [4] | 王象坤, 孙传清. 中国栽培稻的起源与演化研究专集. 北京: 中国农业大学出版社,1996: 1-233. |
| [5] | 徐福荣, 戴陆园, 叶昌荣, 等. 云南稻种资源表现性分布地和分布民族分析. 西南农业大学学报:自然科学版, 2005, 72(1): 14-19. |
| [6] | 朱明雨, 王云月, 朱有勇, 等.云南地方水稻品种遗传多样性分析及其保护意义. 华中农业大学学报, 2004, 23(2): 187-191. |
| [7] | 袁隆平. 杂交水稻超高产育种. 杂交水稻, 1997, 12(6): 1-6. |
| [8] | 杨旺兴, 许旭明, 祁建民, 等.应用表型系统聚类和SSR分子标记研究水稻亲本及籼粳衍生系遗传多样性. 福建农业学报, 2013, 28(3):211-216. |
| [9] | 赖勇, 王鹏喜, 范贵强, 等. 大麦SSR标记遗传多样性及其与农艺性状关联分析. 中国农业科学, 2013, 46(2): 233-242. |
| [10] | 何汉明, 房辉, 周惠萍, 等. 水稻遗传多样性栽培控制稻瘟病的灰色评价. 西南农业学报, 2010, 23(3): 724-727. |
| [11] | 涂敏, 王云月, 卢宝荣, 等. 云南省水稻品种稻瘟病抗性差异与遗传多样性相关研究. 湖北农业科学, 2011, 50(6): 1149-1152. |
| [12] | 朱有勇, 陈海如, 范静华, 等. 利用水稻品种多样性控制稻瘟病研究. 中国农业科学, 2003, 36(5): 521-527 |
| [13] | Tilman D.The greening of the green revolution.Nature, 1998, 396(6708): 211-212. |
| [14] | Zhao W G, Chung J W, Ma K H, et al.Analysis of genetic diversity and population structure of rice cultivars from Korea, China and Japan using SSR markers.Genes Genom, 2009, 31(4): 283-292. |
| [15] | Londo J P, Chiang Y C, Hung K H, et al.Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice,Oryza sativa. Proc Natl Acad Sci USA, 2006, 103(25): 9578-9583. |
| [16] | Normile D.Variety spices up Chinese rice yields.Science, 2000, 289(5482): 1122-1123. |
| [17] | Zhu Y Y, Chen H R, Fan J H, et al.Genetic diversity and disease control in rice.Nature, 2000, 406(6797): 718-722. |
| [18] | 程保山, 杨加银, 徐卫军. SSR标记在水稻遗传育种中的应用. 安徽农业科学, 2009, 37(29): 14038-14040. |
| [19] | 董超, 徐福荣, 杨文毅, 等.云南元阳哈尼梯田水稻地方品种月亮谷的遗传变异分析. 中国水稻科学, 2013, 27(2): 137-144. |
| [20] | 董树斌, 卢宝荣, 王云月, 等. 云南水稻传统品种内的遗传多样性及其维持机制初探. 云南农业大学学报, 2010, 25(1): 1-9. |
| [21] | 孙建昌, 余滕琼, 汤翠凤, 等. 基于SSR标记的云南地方稻种群体内遗传多样性分析. 中国水稻科学, 2013, 27(1):41-48. |
| [22] | 吕广磊, 蔺忠龙, 白现广, 等. 云南栽培稻种SSR遗传多样性比较. 植物学报, 2009, 44(4): 457-463. |
| [23] | 张恩来, 徐福荣, 汤翠凤, 等. 云南当前种植地方稻种SSR遗传多样性分析. 植物遗传资源学报, 2011, 12(6): 890-895. |
| [24] | 严红梅, 董超, 张恩来, 等. 微卫星标记分析水稻地方品种30年的遗传变异. 遗传, 2012, 34(1): 87-94. |
| [25] | 陆祥宇. 稻作传统与哈尼梯田文化景观保护研究. 北京: 清华大学, 2012. |
| [26] | Zhang H, Zhao Q, Sun Z Z, et al.Development and high-throughput genotyping of substitution lines carrying the chromosome segments of indica 9311 in the background of japonica Nipponbare.J Genet Genom, 2011, 38(12): 603-611. |
| [27] | 华蕾, 袁筱萍, 余汉勇, 等. 我国水稻主栽品种SSR多样性的比较分析. 中国水稻科学, 2007, 21(2): 150-154. |
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