Research Papers

Haplotype Analysis of Rc Gene for Weedy Rice in Jiangsu Province

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  • Weed Research Laboratory, College of Life Sciences,Nanjing Agriculture University, Nanjing 210095, China;

Received date: 2013-07-05

  Revised date: 2013-11-09

  Online published: 2014-05-10

Abstract

Rc gene(about 6.4 kb) of 10 weedy rice samples from 10 cities in Jiangsu Province was sequenced and 166 Rc fulllength sequences of Oryza genus in literatures were reviewed. Colinear sequence analysis showed that Rc allele of Jiangsu weedy rice was wild genotype. Nucleotide polymorphism and haplotype analysis showed that Rc nucleotide polymorphism (π=0.19) and separation loci ratio (θw=0.28) of 10 weedy rice samples in Jiangsu Province were higher than that of 56 weedy rice samples from the United States (π=0.09; θw=0.07). Haplotype network and evolutionary phylogenetic analysis showed that Rc gene of weedy rice in Jiangsu was not directly derived from the revertant mutation of white cultivar. In addition, Rc gene sequences of Ludao from Lianyungang,Jiangsu and  Tangdao from Anhui were similar to that of cultivated rice, while genetically distant from weedy rice samples which has been leading to serious infestation in Jiangsu Province.

Cite this article

LI Xiaoyan, QIANG Sheng, SONG Xiaoling, CAI Kun, DAI Weimin* . Haplotype Analysis of Rc Gene for Weedy Rice in Jiangsu Province[J]. Chinese Journal OF Rice Science, 2014 , 28(3) : 304 -313 . DOI: 10.3969/j.issn.1001-7216.2014.03.010

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