Research Papers

Characterization of Cold Tolerance  and Identification of Cold Tolerance QTLs for Rice Single Segment Substitution Lines at Plumule  and Seedling Stages

Expand
  • 1 Rice Research Institute, Sichuan Agricultural University, Wenjiang 611130, China; 2 Leshan Agricultural Science Research Academy, Leshan 614000, China;

Received date: 2013-02-20

  Revised date: 2013-03-19

  Online published: 2013-07-10

Abstract

The cold tolerance at plumule  stage (CTP) and seedling stage (CTS) were respectively evaluated at 4℃ and 13℃/7℃ (day/night) using a set of single segment substitution lines (SSSLs) derived from indica recipient (9311) and japonica donor (Nipponbare). The survival seedling rate and the normal leaf rate (NLR) were used as the estimation index for CTP and CTS, respectively. The results showed that the CTP and CTS of Nipponbare were extremely stronger than those of  9311, and the difference of CTP and CTS were extremely significant among SSSLs. The SSSLs (X724, X732 and X733) with strong CTP and CTS mostly kept the agronomic traits of 9311. The General Combing Ability (GCA) of these three SSSLs, such as yield GCA, were much better than  that of 9311. A total of 18 quantitative trait loci (QTLs) for CTP, 5 QTLs for CTS were identified among 20 introgression segments distributed on 12 chromosomes. Among these QTLs, the CTP QTLs (qCTP9, qCTP11.2  and qCTP12.1), and the CTS QTLs (qCTS1.1 and qCTS1.2) showed more additive effect, and the corresponding SSSLs of those QTLs displayed stronger CTP and CTS, respectively.

Cite this article

ZHOU Yong1,2 , ZHU Xiaobo1, YUAN Hua1, ZHENG Ying2, QIN Peng1, WEI Yinghai1,2, WANG Yuping1, HUANG Shijun2, LI Shigui1,* . Characterization of Cold Tolerance  and Identification of Cold Tolerance QTLs for Rice Single Segment Substitution Lines at Plumule  and Seedling Stages[J]. Chinese Journal OF Rice Science, 2013 , 27(4) : 381 -388 . DOI: 10.3969/j.issn.1001-7216.2013.04.007

References

\[1\]Lou Q J, Chen L, Sun Z X, et al. A major QTL associated with cold tolerance at seedling stage in rice(Oryza sativa L.). Euphytica,  2007, 158: 8794.

\[2\]Sthapit B R, Witcombe J R. Inheritance of tolerance to chilling stress in rice during germination and plumule greening. Crop Sci,  1998, 38: 660665.

\[3\]潘英华, 郑薇薇, 李金杰, 等. 水稻耐冷性鉴定及定位研究概况. 中国农学通报, 2010, 26(17): 5459.

\[4\]Fujino K, Sekiguchi H, Sato T, et al. Mapping of quantitative trait loci controlling lowtemperature germinability in rice(Oryza sativa L.). Theor Appl Genet,  2004, 108: 794799.

\[5\]Andaya V C, Mackill D J. Mapping of QTLs associated with cold tolerance during the vegetative stage in rice. J Exp Bot,  2003, 54: 25792585.

\[6\]Koseki M, Kitazawa N, Yonebayashi S, et al.  Identification and fine mapping of a major quantitative trait locus origination from wild rice, controlling cold tolerance at the seedling stage. Mol Genet Genom,  2010, 284: 4554.

\[7\]Zhou L, Zeng Y W, Hu G L, et al. Characterization and identification of cold tolerant nearisogenic lines in rice. Breeding Sci,  2012, 62: 196201.

\[8\]Baruah A R, Oka N I, Adachi M, et al. Cold tolerance at the early growth stage in wild and cultivated rice. Euphytica,  2009, 165: 459470.

\[9\]Jin R Z. Genetics and evaluation of cold tolerance of rice in Japan. Rice Rev Abstr,  1990, 9: 15.

\[10\]Cruz R P D, Milach S C K, Federizzi L C. Inheritance of rice cold tolerance at the germination stage. Genet Mol Biol,  2006, 29: 314320.

\[11\]简水溶, 万勇, 罗向东, 等. 东乡野生稻苗期耐冷性的遗传分析. 植物学报, 2011, 46(1): 2127.

\[12\]Zhao X C, Dolferus R, Drvey N. Precision breeding of cold tolerant rice. IREC Farmers’ Newsl,  2007, 177: 1213.

\[13\]Shahi B B, Khuxh G S. Genetic analysis of cold tolerance in rice. Rice Genet,  1986, 1: 429435.

\[14\]Zhang Z H, Su L, Li W, et al. A major QTL conferring cold tolerance at the early seedling stage using recombinant inbred lines of rice (Oryza sativa L. ). Plant Sci,  2005, 168: 527534.

\[15\]陈玮, 李炜. 水稻RIL群体芽期耐冷性基因的分子标记定位. 武汉植物学研究, 2005, 23(2): 116120.

\[16\]严长杰, 李欣, 程祝宽, 等. 利用分子标记定位水稻芽期耐冷性基因. 中国水稻科学, 1999, 13(3): 134138.

\[17\]乔永利, 韩龙植, 安永平, 等. 水稻芽期耐冷性QTL的分子定位. 中国农业科学, 2005, 38: 217221.

\[18\]杨杰, 仲维功, 王军, 等. 水稻芽期耐冷性的QTL分析. 基因组学与应用生物学, 2009, 28(1): 4650.

\[19\]巩迎军, 阮雯君, 荀星, 等. 水稻芽性状耐冷性的QTL分析. 分子植物育种, 2009, 7(2): 273278.

\[20\]Lin J, Zhu W Y, Zhang Y D, et al. Detection of QTL for cold tolerance at bud bursting stage using chromosome segment substitution lines in rice (Oryza sativa L.). Rice Sci,  2011, 18: 7174.

\[21\]Suh J P, Lee C K, Lee J H, et al. Identification of quantitative trait loci for seedling cold tolerance using RILs derived from a cross between japonica and tropical japonica rice cultivars. Euphytica,  2012, 184: 101108.

\[22\]钱前, 曾大力, 何平, 等. 水稻籼粳交DH群体苗期的耐冷性QTLs分析. 科学通报, 1999, 44(22): 24022407.

\[23\]Misawa S, Mori N, Takumi S, et al. Mapping of QTLs for lowtemperature response in seedlings of rice (Oryza sativa L.). Cereal Res Commun,  2000, 28: 3340.

\[24\]Han L Z, Qiao Y L, Cao G L, et al. QTLs analysis of cold tolerance during early growth period for rice. Rice Sci,  2004, 11: 245250.

\[25\]夏瑞祥, 肖宁, 洪义欢, 等. 东乡野生稻苗期耐冷性的QTL定位. 中国农业科学, 2010, 43(3): 443451.

\[26\]Zhu W Y, Lin J, Yang D W, et al. Development of chromosome segment substitution lines derived from backcross between two sequenced rice cultivars, indica recipient 9311 and japonica donor Nipponbare. Plant Mol Biol Rep,  2009, 27: 126131.

\[27\]Xi Z Y, He F H, Zeng R Z, et al. Development of a wide population of chromosome singlesegment substitution lines in the genetic background of an elite cultivar of rice (Oryza sativa L.). Genome,  2006, 49: 476484.

\[28\]杨川航, 王玉平, 涂斌, 等. 利用籼粳交RIL群体对水稻耐寒性及再生力的QTL分析. 中国水稻科学, 2012, 26(6): 741745.

\[29\]徐云碧, 申宗坦. 水稻苗期耐冷性鉴定技术的研究. 浙江农业大学学报, 1990, 10(1): 2530.

\[30\]Eshed Y, Zamir D. An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yieldassociated QTL. Genetics,  1995, 141: 11471162.

\[31\]Zhang Y S, Yang J Y, Shan Z L, et al. Substitution mapping of QTLs for blast resistance with SSSLs in rice (Oryza sativa L. ). Euphytica,  2012, 184(1): 141150.

\[32\]McCouch S R, CGSNL. Gene nomenclature system for rice. Rice,  2008, 1: 7284.

\[33\]Glaszmann J C. Isozymes and classification of Asian rice varieties. Theor Appl Genet,  1987, 74: 2130.

\[34\]Glaszmann J C, Kaw R N, Khush G S. Genetic divergence among cold tolerance rices (Oryza sativa L. ). Euphytica,  1990, 45: 95104.

\[35\]Kubo T, Yoshimura A. Complementary genes causing F2 sterility in japonica/indica cross of rice. Rice Genet Newsl,  1999, 16: 6870.

\[36\]Kubo T, Eguchi M, Yoshimura A. A new gene for F1 pollen sterility in japonica/indica cross of rice. Rice Genet Newsl,  2000, 17: 6364.

\[37\]Han L Z, Qiao Y L, Zhang S Y, et al. Identification of quantitative trait loci for cold response of seedling vigor traits in rice. J Genet Genom,   2007, 34(3): 239246.

\[38\]Xu L M, Zhou L, Zeng Y W, et al. Identification and mapping of quantitative trait loci for cold tolerance at the booting stage in a japonica rice nearisogenic line. Plant Sci,  2008, 174: 340347.

\[39\]Han L Z, Zhang Y Y, Qiao Y L, et al. Genetic and QTL analysis for lowtemperature vigor of germination in rice. Acta Gen Sin,  2006, 33(11): 9981006.

\[40\]Dai L Y, Lin X H, Ye C R, et al. Identification of quantitative trait loci controlling cold tolerance at the reproductive stage in Yunnan landrace of rice, Kunmingxiaobaigu. Breeding Sci,  2004, 54: 253258.

\[41\]Suh J P, Jeung J U, Lee J I, et al. Identification and analysis of QTLs controlling cold tolerance at the reproductive stage and validation of effective QTLs in coldtolerant genotypes of rice (Oryza sativa L. ). Theor Appl Genet,  2010, 120: 985995.

\[42\]Andaya V C, Mackill D J. QTLs conferring cold tolerance at the booting stage of rice using ricombinant inbred lines from a japonica×indica cross. Theor Appl Genet,  2003, 106: 10841090.

\[43\]詹庆才, 朱克永, 陈祖武, 等. 利用分子标记进行水稻苗期耐冷性相关性状的QTLs研究. 杂交水稻, 2005, 20(1): 5055.

\[44\]Oh C S, Choi Y H, Lee S J, et al. Mapping of quantitative trait loci for cold tolerance in weedy rice. Breeding Sci,  2004, 54: 373380.

\[45\]Ranawake A L, Nakamura C. Cold tolerance of an inbred line population of rice (Oryza sativa L.) at different growth stages. Trop Agric Res & Ext,  2011, 14: 2533.

\[46\]Kaw R N, Khush G S. Combining ability for lowtemperature tolerance in rice//Proceedings  of the  International Rice Genetics Symposium. Los Banos, Philippines, 2008: 593612.
Outlines

/

Tel: 0571-63370278 E-mail: cjrs@263.net
Supported by Beijing Magtech Co., Ltd.