Experimental Techniques

Establishment and Preliminary Application of a Quantitative Realtime PCR Method for Detection of Conidia of Ustilaginoidea virens 

Expand
  • 1 College of Chemistry and Life Science, Zhejiang Normal University, Jinhua 321004, China ; 2 State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection Microbiology,Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; 3 Xiangshan Plant Protection and Quarantine Station,  Xiangshan 315700,  China;

Received date: 2011-09-16

  Revised date: 2012-03-20

  Online published: 2012-07-10

Abstract

A realtime PCR quantitative detection technology was established by using two pairs of specific primers designed according to the internal transcribed spacer (ITS) sequences of Ustilaginoidea virensand their corresponding TaqMan probes. The results showed that the combination of the specific primers and probe of uvr292rf/uvr397rr/uvrp333 was highly sensitive and specific in the quantification of U. virens with a minimum detection limit of 24 fg. A linear model between Ct and common logarithm of spores number was established by realtime PCR with the templates of DNA from diluted spores solution and the theoretical detected limit was 0.67 spore. According to the quantitative detection of three air samples collected in paddy field at various time with this linear model,  the quantity of this fungus conidia fluctuated monthly.

Cite this article

ZHENG Jing1,2, ZHANG Zhen2,*, JIANG Hua2, WANG Yanli2, CHAI Rongyao2, QIU Haiping2, MAO Xueqin2,WANG Jiaoyu2, DU Xinfa2, LAN Zhaohui3, SUN Guochang2,* . Establishment and Preliminary Application of a Quantitative Realtime PCR Method for Detection of Conidia of Ustilaginoidea virens [J]. Chinese Journal OF Rice Science, 2012 , 26(4) : 500 -505 . DOI: 10.3969/j.issn.10017216.2012.04.017

References

\[1\]姜志强, 姜志超, 姜志浩, 等. 稻曲病病粒数对水稻产量影响分析.  北方水稻,2009, 39(3):5354.

\[2\]白元俊, 王疏, 刘晓舟,  等. 水稻稻曲病菌的毒素研究.  辽宁农业科学, 1997(1):3033.

\[3\]陈美军, 胡东维, 徐颖. 稻曲病菌毒素的活性测定, 抗体制备与细胞定位. 实验生物学报,2004,37(4):310314.

\[4\]左广胜,杜生茂.  稻曲病菌初侵染源研究.  中国农学通报, 1996, 12(5):1718.

\[5\]West J S , Atkins S D ,  Emberlin J,  et al.PCR to predict risk of airborne disease. Trends Microbiol, 2008, 16(8):380387.

\[6\]Sreeramulu T, Vittal B. Periodicity in the airborne spores of the rice false smut fungus,  Ustilaginoidea virens.Trans Bri Mycol Soc, 1966, 49(3):443449.

\[7\]Devi T, Singh N.  Aerobiology and epidemiology of false smut disease of rice by Ustilaginoidea virens (Syn. Claviceps oryzae sativae) in Thoubal District.  Manipur J  Mycopathol Res, 2007, 45(1):107.

\[8\]任衍春, 张震, 毛雪琴.  水稻纹枯菌总 DL3 提取方法的比较.  2011, 23(4):741747.

\[9\]Ward E. Use of molecular methods for the detection of fungal spores. Met Mol Biol (Clifton, NJ),2009,508:147159.

\[10\]Luo Y, Ma Z,  Reyes H C,  et al.Quantification of airborne spores of Monilinia fructicola in stone fruit orchards of California using realtime PCR. Eur J Plant Pathol,2007, 118(2):145154.

\[11\]Rogers S L ,Atkins S D, West J S . Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR.  Plant Pathol, 2009, 58:324331.

\[12\]Carisse O,  Tremblay D,  LVesque C,  et al.Development of a TaqMan realtime PCR assay for quantification of airborne conidia of Botrytis squamosa and management of Botrytis leaf blight of onion.Phytopathology, 2009, 99(11):12731280.

\[13\]Falacy J S,Grove G G, Mahaffee W F ,  et al.Detection of Erysiphe necator in air samples using the polymerase chain reaction and speciesspecific primers.Phytopathology, 2007, 97(10):12901297.

\[14\] Zeng Q Y,  Westermark S O,  RasmusonLestander A,  et al. Detection and quantification of Wallemia sebi in aerosols by realtime PCR, conventional PCR, and cultivation. Appl Envir Microbiol,2004,70(12):7295.

\[15\]周永力.  稻曲病菌的 Nested PCR 检测.  菌物学报, 2004, 23(1):102108.

\[16\]周永力, 谢学文, 王疏,  等.采用 NestedPCR 从田间和水稻植株上检测稻曲病菌. 农业生物技术学报, 2006,14(4):542545.

\[17\]Zhou Y L ,  Izumitsu K,  Sonoda R, et al. PCRbased specific detection of Ustilaginoidea virens and Ephelis japonica. J Phytopathol, 2003, 151(9):513518.

\[18\]Ashizawa T, Takahashi M,  Moriwaki J, et al.Quantification of the rice false smut pathogen Ustilaginoidea virens from soil in Japan using realtime PCR. Eur J Plant Pathol,  2010, 128(2):221232.
Outlines

/

Tel: 0571-63370278 E-mail: cjrs@263.net
Supported by Beijing Magtech Co., Ltd.