Research Papers

Mapping of QTLs for Grain Shape Using WholeGenome Resequenced  Chromosome Segment Substitution Lines in Rice

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  • 1Jiangsu Key Laboratory of Crop Genetics and Physiology /Key Laboratory of Plant Function Genomics, Ministry of Education, Yangzhou University, Yangzhou 225009, China; 2Songjiang Agricultural Technology and Popularization Center of Shanghai, Shanghai 201613, China; 3Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200233, China

Received date: 2010-10-29

  Revised date: 2010-11-30

  Online published: 2011-07-10

Abstract

One hundred and twentyeight chromosome segment substitution lines derived from 9311 as recipient and Nipponbare as donor, were used for mapping QTLs for grain shape by combining  the sequencingbased Binmap with a multiple linear regression analysis. Six  and  two   QTLs were identified for grian length(GL)  and grian width(GW), respectively. qGL3.1  was mapped in a region of 5 792 954 bp on chromosome 3, qGL3.2    in a region of 917 878 bp on chromosome 3; qGL81   in a region of 889 543 bp on chromosome 8;  qGL8.2   in a region of 208 614 bp on chromosome 8; qGL9.1   in a region of 1 149 685 bp on chromosome 9;  qGL11.1  in a region of 3 184 760 bp on chromosome 11; qGW1.1  in a region of 200 070 bp on chromosome 1;  and qGW5.1    in a region of 704 905 bp on chromosome 5. The results  provided a foundation for fine mapping QTLs and subsequent gene cloning.

Cite this article

XU Jian-Jun1, 2 , ZHAO Qiang3, TANG Zai-Xiang1, ZHAO Yuan-Feng1, ZHU Lei1, XU Chen-Wu1, GU Ming-Hong1, HAN Bin3 . Mapping of QTLs for Grain Shape Using WholeGenome Resequenced  Chromosome Segment Substitution Lines in Rice[J]. Chinese Journal OF Rice Science, 2011 , 25(4) : 365 -369 . DOI: 10.3969/j.issn.1001-7216.2011.04.004

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